Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04562 ATGGAGTCTGACGGAAACTCTGACAATGGCGGTGGAAGtaaaatcttttcaaatctTGCTCCGGTGGTGCCAGAAGAATCTGGCGAAGGTTTACCTTATGCACCGATAAATTTTCCGAATCCCGGTGACATTTGGCGGTGGAAAGCTGGTAAGAGGATTTCAAATAACGGTAATTTTCGTGACCGTTATTTGTATCTTCCTCGCCGGCTCTCTGCCCCTGCTAATCGGACTTCTTTCCGTGGCGGATTTGCTAGTAAACTTGCAGTTGAACGCTACGTCAGAGAAAAGTTCCCTAAAGTCAATATTTCGGATTTCTTCGCTTCATTCAGCTGGAGAATTCCTTCTGGTCTTCCAGGCAATATGAATCCTTCAGTTGATGAACTTAAACAGTTTGAATTAGAAGAACAGGAAGAATCCAATGTCCCCTGTGACATTGGTGGATGCAAAGCTGGGAATCAGAAGTGCAGCAGCTTGATTTTGGAAAAAGAATATCCACCTGTCATGCCGTGTGATTTATGTTGTGCTGAGCCTAAATTTTGCGGTGAATGTTGCTGCATTCTTTGTTACAAAGCTGTTGATTCAACACATGGTGGTTGTAGCTATATTATGTGCAAAGAAAAACACGGCGATACTATTTGTGGGCATGTCGCTCATCTGAAATGTGCTTTTCGAGCTTATACGGCCGGCACCTTGGGGGGGATGATAGGATTGGATGCTGAGTATTTTTGTCGGCGCTGTAATGGGAGGACTGAACTGATTTCTCATGTTTATAAGATTCTACTGACATGCGAAGCTATTGATTCAGATGATGTGaaggcattttttttaaatcttggCATTAATCTCTTACACGGTTCAGAGAAAGCCGCAGCAAAGGAGCTTATGAGTCGACTTACATTGGCCGTGTCAAAGCTTAAATGTGGGACTAATACTGAAGATATCTTGAATGTTTGTAACAAAGTTACAGCTCATTCTTCAGGTTCCTCTTATAATGGCGAGGCTACAGAAGATGAAAGCCCTTTAAATCCTTCAAATGTTGTAAATGGGACAGACAATTTTTGGTATCGATCCGAGGTGTTAAAACTTGAGGCTGACATTGATGAGGGTCTGGAGGCTCTTAGAAAGTCACAGAAGTATGAATATAAGTTGGCAGAAGAAAGCCTTAGGGCACATGTGAAATATTTACAAACTCTTTTTCAGCAACTGAACAAAGAGAAGTCTGAATTAGCATGTCAACCAAACGCATCTCATTCAAGTGTCTTGTTTCAAACTGTCGAGAAACGAAAAGAACAGCTAAGGCAGGGAATGATCAAATTCGAAGAAATGAAGAAGAAGGCTATCGGTGATTATGCAGCAGAACCTCGACTACCAGCTGGATTCCAGTTGGATATAGAGAGTGTGGAGGAACCTGAAGACATCTTAATATCCAGAGAAGTTTCTGAAGCTGGTCAAAGTGTTCGTCAGTGGCTAGTTCGTTGGACTTGTCATGTTCCTCATGTGTGCCAAATTGGGTGTCGTTGCCTTGGATTGCCAAATTGGCTTGGGCTAGAGCTCCATTTCTTTGACATTGTTCACACACTTCCCTCTCGGATTGACATCCaaGTTGATAAGTTACTCGTCTCTGAACCAGCTGCGCTCACCAGTCACCACCCTAACTTCATTCTCAACTTCATCATTTTCACCATCCAAACATTCATGGACTCCAAAGGAAACTCTAATAATCACAATGTCATCAATGATGGTGGCAACAACAGATTCCAAAATCTTCCACCGGTTGCACCGAAACAATCTGGTGAAGGCTTACCTTATGCACCGGAAAATATTCCAAATCCCGGTGACATATGGCGGTGGAAAGTTGGTAAGAGGATTTCAAATAACGGTAACTTTCGTGACCGTTATTTGTATCTTCCTCGCCATCCTTCCACCCCTGCAAATCGGACTTCTTACAGTGGTGGATTCCCTAGCAAGCCAGCAGTTAGACGCTACCTTAAAGAAAAATTCCCTCATATTAATATTCATGAATTCTTTTCTTCATTCAGTTGGAATATTCCTTCTGGTCTTCCAGGCAATATGAATCCAACAGCAGATCATGATTTGTTTCCACCGATGGGATTTGAAGCACCGAAAGAAACTGTTATCCCCTCTAATATTGGTGGATGCAAAGCTGGGAATAAGAATTGCAGCAGCTTGATTTTGGAAAGAGAATGTCCATTTGTCATGCCGTGTGAATTTTGTTGTGCTGAGCCTAAGTTTTGCCGCAAATGTTGCTGCATTCTTTGTAAGAAAGCCGTTGATTCAGCTCATGGTGGCTATAGCTATATCATGTGTGAAAAAAAACACGGCGATAATATTTGTGGGCATCTGTGTCATCTGGAATGTGCTTTTCGAACTTACAAGGCCGGCACCTTGGGGGGAGTTTTTGATTTGGATGCTGAGTATTTTTGTTGGCGCTGTAATGGGAAGACTGAACTGATTTCTCATGTTAGTAAGCTTCTACTGACGTACGAAGGTATTGATTCAGATGATGATGTCAAGGAAAAAATGTTAAATCTTGGCATTAATCTCTTACGCGGTTCAGAGAAAGCCGCTGCAAAGAAGCTTATGAGTCGAATTGCATTGGCCATATCAAAGCTCAAACCTGGAAGTAATACTAAAGATATCTTCAATGTTGCTGATGAAGTTAGAGCTCATTTTTCAGGTTGCTGTAAATGTAATAATGGCGAGGCTGCTATCAAAGATGAAAGCCCTTTAAACCATTCAAATGTTGGaaatgagacaaaagatttTCGGCGTCAATTTGGGATATTAAAACTTGAGTCTGAGATTGATCAAGATCTGAAGGATTTTAGAAAGCCACCGAAGCAGGAATATCAGTTGGCAGAAGAAAAGCCTAACATGTCAAATATTTATCGCAGCAACTGA 2922 0.412 MESDGNSDNGGGSKIFSNLAPVVPEESGEGLPYAPINFPNPGDIWRWKAGKRISNNGNFRDRYLYLPRRLSAPANRTSFRGGFASKLAVERYVREKFPKVNISDFFASFSWRIPSGLPGNMNPSVDELKQFELEEQEESNVPCDIGGCKAGNQKCSSLILEKEYPPVMPCDLCCAEPKFCGECCCILCYKAVDSTHGGCSYIMCKEKHGDTICGHVAHLKCAFRAYTAGTLGGMIGLDAEYFCRRCNGRTELISHVYKILLTCEAIDSDDVKAFFLNLGINLLHGSEKAAAKELMSRLTLAVSKLKCGTNTEDILNVCNKVTAHSSGSSYNGEATEDESPLNPSNVVNGTDNFWYRSEVLKLEADIDEGLEALRKSQKYEYKLAEESLRAHVKYLQTLFQQLNKEKSELACQPNASHSSVLFQTVEKRKEQLRQGMIKFEEMKKKAIGDYAAEPRLPAGFQLDIESVEEPEDILISREVSEAGQSVRQWLVRWTCHVPHVCQIGCRCLGLPNWLGLELHFFDIVHTLPSRIDIQVDKLLVSEPAALTSHHPNFILNFIIFTIQTFMDSKGNSNNHNVINDGGNNRFQNLPPVAPKQSGEGLPYAPENIPNPGDIWRWKVGKRISNNGNFRDRYLYLPRHPSTPANRTSYSGGFPSKPAVRRYLKEKFPHINIHEFFSSFSWNIPSGLPGNMNPTADHDLFPPMGFEAPKETVIPSNIGGCKAGNKNCSSLILERECPFVMPCEFCCAEPKFCRKCCCILCKKAVDSAHGGYSYIMCEKKHGDNICGHLCHLECAFRTYKAGTLGGVFDLDAEYFCWRCNGKTELISHVSKLLLTYEGIDSDDDVKEKMLNLGINLLRGSEKAAAKKLMSRIALAISKLKPGSNTKDIFNVADEVRAHFSGCCKCNNGEAAIKDESPLNHSNVGNETKDFRRQFGILKLESEIDQDLKDFRKPPKQEYQLAEEKPNMSNIYRSN 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04562 973 Pfam PHD - plant homeodomain finger protein 723 851 IPR032881 -
Tsu01g04562 973 Pfam PHD - plant homeodomain finger protein 151 278 IPR032881 -
Tsu01g04562 973 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 586 963 - -
Tsu01g04562 973 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 13 446 - -
Tsu01g04562 973 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 586 963 - -
Tsu01g04562 973 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 13 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04562 Tsu-Chr1 53198480 53205647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04562 748 875 PHD Gene Family AT3G24440 28.030 2.56e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04562 - - mtr:MTR_1g103600 563.533