Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04552 ATGTTTGAACCAGATTCTTCTTCAAACTTTGGTGGTAATATTCTTCAAATTCCAAATTTTGTTGTCACTGAACAGAAACAATTACCAGCAACAGTGATTAATGGTGGAAAGAAAGATAGACACAGTAAGATTCACACATCACAAGGTTTAAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCTAGAAAATTCTTTGATCTTCAAGATATGTTAGAGTTTGATAAACCAAGTAACACACTTGAGTGGCTTTTCACTCAATCTGACACAGCAATCAAAGAACTTGCTAGAACTAAAAACAACGGCAGCGGTGGTTACAACGTCGACAACAAGGCTCTGTTTGATACAAATAGCAACAAATCATTTTCTTCCTCCGGTGGTGGTGACGGATGTTCTTCGAAAAGTAGAAAATTGAAATggacacaaaaagaagaaacaaaaaaggaaTCAAGAGAAAGAGCTAGAGCAAGAGCAAGAGAAAGAACTTGTTACAAGATGTGTAGTAGTGGAAGAACTCAAGAAGAAATTAAGTACCCTACAACAGATTCAACAAGTACTACTCAACAAATGTTACTTCAACAATTGATgtcatcaacatcaacatcatcaccTGTTGATAGTACTGAAACTGAGGCTTATGCAAGATGGCGTCATCATCAacttcttcaacttcaacataATCACTTATTGGATAGTGAAATAGCTAGAGAACATGGTGGATTTAATGTCATTGAAGAATCTATTATGATTAAAAGGAACATGATCCACTATGAATCTATCTACATACTTTATGAATCAGTGAGGTTGGAAAGTCTtgggagaagagaaagaatcAGAGGCAACACTAATTTGCTAGTTTTCGGTAATATCTGA 873 0.3184 MFEPDSSSNFGGNILQIPNFVVTEQKQLPATVINGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTQSDTAIKELARTKNNGSGGYNVDNKALFDTNSNKSFSSSGGGDGCSSKSRKLKWTQKEETKKESRERARARARERTCYKMCSSGRTQEEIKYPTTDSTSTTQQMLLQQLMSSTSTSSPVDSTETEAYARWRHHQLLQLQHNHLLDSEIAREHGGFNVIEESIMIKRNMIHYESIYILYESVRLESLGRRERIRGNTNLLVFGNI 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04552 290 MobiDBLite consensus disorder prediction 118 156 - -
Tsu01g04552 290 Pfam TCP family transcription factor 36 168 IPR017887 -
Tsu01g04552 290 ProSiteProfiles TCP domain profile. 37 95 IPR017887 -
Tsu01g04552 290 PANTHER TRANSCRIPTION FACTOR TCP12 27 262 - -
Tsu01g04552 290 MobiDBLite consensus disorder prediction 136 156 - -
Tsu01g04552 290 ProSiteProfiles R domain profile. 148 165 IPR017888 -
Tsu01g04552 290 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 262 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04552 Tsu-Chr1 53096656 53097965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04552 37 179 TCP Transcription Factor Family AT1G67260 43.114 1.54e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tsu01g04552 TCP 3.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04552 - - mtr:MTR_1g103380 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04552 01 53096656 53097965 Tsu06g03267 06 43353951 43356235 PCT