Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04549 ATGCAATCAGAACCTGGGGGTCCTAGTACCCCTAACATGGGGGCAGGTGGAGCTGGGAATTCAAGGATGAAGGGTAGTGGAAATCAAAGCAGCAAAGATATGATTTTCAGAGCTGATATGATTGATTTGAAGAGCTTGGATGCCGAGCTAGAAAGGCACTTGACCAGGGTTTTATCTAGAAACGCTGAGAAAAATCGGCGTAAAGAAGAGTGGGAGATTGATTTGGCCAAATTGGAAATACGATATGTTGTTGCGAACGGAGCTTATGGAACTGTCTACAGGGGAACTTATGACAATCAAGATGTTGCTGTGAAAGTGTTGGACTGGGGGGAGGATGGCGTTGCCACTGCATCTGAAATTGCTGGCTTACGAGCAGCATTTCGGCAGGAGGTTACTGTGTGGCAAAAACTTGATCATGCAAATGTCACAAAATTTATTGGAGCTTCAATGGGAACTTCAAATCTTAAGATTCCTTCAGATGCTGGCGGTCAAGATACCGTTCCTTCCAAGGCGTGTTGTGTTGTTGTCGAGTTTGTTCATGGTGGGACATTGAAACAATTCTTGTTGAAAAATAGGCGTAAGAAACTCCCATATAAGGTTGTGATTCAGTTGGCTTTGGACCTCGCTAAAGGTCTTAGTTATCTACATTCGAGGAAAATTGTTCACCGCGATGTGAAAACTGATAATATGTTGCTGgatgaaaaccaaaatttgaaaatagctGATTTTGGTGTTGCTCGTGTTGAAGCGGTAAATCCAAGTGAAATGACTGGTGATACCGGAACCGTTGGATATATGGCACCAGAGGTTATCAATGGTAAGCCTTACAACAGAAGCTGTGATGTCTACAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGACATGCCTTATCTGAATCTAAGCTTTGCGGACGCGTCAGCTGCAGTCGCTAATCGGAATTTACGACCAGAAATTCCTAGATGCTGCCCAAGTGTCTTAGCAAATATAATGAAACGATGCTGGGACAAAAATCCCCAAAAGCGTCCCGAGATGCATGACGTGGTGAGGATGTTGGAAGCAATTGATACAAGCAAAGGAGGTGGAATGATACCAGATGATCAGACTCCattatgtttttgtttcatgGCTGGTCGCCGTGGTCcgtaa 1152 0.4262 MQSEPGGPSTPNMGAGGAGNSRMKGSGNQSSKDMIFRADMIDLKSLDAELERHLTRVLSRNAEKNRRKEEWEIDLAKLEIRYVVANGAYGTVYRGTYDNQDVAVKVLDWGEDGVATASEIAGLRAAFRQEVTVWQKLDHANVTKFIGASMGTSNLKIPSDAGGQDTVPSKACCVVVEFVHGGTLKQFLLKNRRKKLPYKVVIQLALDLAKGLSYLHSRKIVHRDVKTDNMLLDENQNLKIADFGVARVEAVNPSEMTGDTGTVGYMAPEVINGKPYNRSCDVYSFGICLWEIYCCDMPYLNLSFADASAAVANRNLRPEIPRCCPSVLANIMKRCWDKNPQKRPEMHDVVRMLEAIDTSKGGGMIPDDQTPLCFCFMAGRRGP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04549 383 Gene3D Transferase(Phosphotransferase) domain 1 181 363 - -
Tsu01g04549 383 Pfam Protein tyrosine and serine/threonine kinase 80 353 IPR001245 GO:0004672|GO:0006468
Tsu01g04549 383 PRINTS Tyrosine kinase catalytic domain signature 324 346 IPR001245 GO:0004672|GO:0006468
Tsu01g04549 383 PRINTS Tyrosine kinase catalytic domain signature 176 189 IPR001245 GO:0004672|GO:0006468
Tsu01g04549 383 PRINTS Tyrosine kinase catalytic domain signature 280 302 IPR001245 GO:0004672|GO:0006468
Tsu01g04549 383 PRINTS Tyrosine kinase catalytic domain signature 214 232 IPR001245 GO:0004672|GO:0006468
Tsu01g04549 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Tsu01g04549 383 MobiDBLite consensus disorder prediction 1 30 - -
Tsu01g04549 383 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 17 375 - -
Tsu01g04549 383 CDD STKc_MAP3K-like 87 353 - -
Tsu01g04549 383 Coils Coil 59 81 - -
Tsu01g04549 383 SMART serkin_6 78 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04549 383 Gene3D Phosphorylase Kinase; domain 1 67 160 - -
Tsu01g04549 383 SUPERFAMILY Protein kinase-like (PK-like) 63 353 IPR011009 -
Tsu01g04549 383 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 375 - -
Tsu01g04549 383 ProSiteProfiles Protein kinase domain profile. 78 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04549 Tsu-Chr1 53050672 53053353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04549 15 383 MAP Kinase Kinase Kinase AT3G22750 71.429 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Tsu01g04549 PK_Tyr_Ser-Thr 8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04549 - - gmx:100803917 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04549 01 53050672 53053353 Tsu05g00090 05 639736 643833 PCT