Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04547 ATGGATTCCAATAACCCTTACGAGATCGACGACGACGACTATGAGGGATTGGATTGGGAAGCAGTTGTAAAAGCAGCCGACGCCGCTTGCCAAATGCAAAGTGAAGCAAAATCAAATGGAAACGAAGCGGAAAAGGTTTATCAAAAGGGGAAGGGAAAACAATCCACACTTGATAATTTCGTTAGAATTTCGAAAAAGGAAACTGAAACGATTCAGTTGAAAGAAAACGATGTTGAAGAATCTACTTGTACTCATCTCATTGATATTGAAGCAGCCAAAACTTGGATATACCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTACCCAGACTGCACTCTTTCAAAACACAATGGTTGCCTTGCCAACAGGACTTGGCAAAACTCTCATTGCCGCTGTTGTCATGTTTAACTACTTTAGATGGTTTCCTGAGGGGAAAATAGTATTTGCTGCTCCTTCTCGACCACTTGTCATGCAACAGATAGAAGCATGCCATAACATTGTGGGGATACCTCAAGAATGGGCAGTTGATATGACTGGTCAGTTAAGTCCTCCCAAAAGAGCTCGTTTGTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGACATTCAATCGGgTAAATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACTCTTATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCGGTGCAACTAAGAATATTAGCATTAACTGCAACACCAGGATCAAAGCAGCAGACCGTCCAGGATGTTATTAATAATTTGCATATCTCCAAGCTCGAACATCGCAATGAAACTGACCATGACGTTATTTCATATGTTCACGACAGGAAGATAGAGTTGATACAGGTTGCAATGGGCCAAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATTGTAGCCAGGCTTACTAAAATTGGGGCCATTCAGAATAGAGATTATCGTACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAGGGGCACTTGCAAGATCTTTCACATATCAACTCTGGAGACGTTGAAGGGTATTTTGGAGTTCTTATTACTCTTTATTACATCCATAAACTGCTTTCAAGTCACGGAATAAGGCCAGCATATGAGATGCTTGAAAGAAAATTGAAGCAAGGgatttttgcaaaatatatgagtaaaaatgaAGATATTCTGAAAGCAAGGCAACTAATGCAGCAAAGCTTGTCTCATGGAGCGTCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTGATTATTTTCTCCAATTACAGAGAAAGTGTCAGGGACATAATGGTTGCACTTGGAGGTACTGGGGATCAAGTTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAACAATGAAAGGCCAGTCCCAGAAAGTTCAGCAGGCTGTGCTTAAGAAATTCCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTGGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACTGGAAGAAAGCATGATGGACGAGTTGATATCCTTTGGTTGTCAATTTTAGTTTTGAAAGGCTACTTGAAAAAAAAGGCAAAGGGCAAGACTATAAGTAAACACATGCGAAATGGCGGCGTAAATAGCTTTGTCTTTCATCCCAGTCCAAGGATGATTCCCCACGTTCTTAAACCAGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGTCAAACGAATGTAATAGAAGACCATCTTCAAATTTCTGCATCGAAAGACAGACTCACTCTTGATGAAATTGGTTtacttgaaaaatattttccCTCTACCGGTGAAAATAGATGTAGATTGTCTCTTATCGCCTTCCCTCACTTTCAGACATTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTATGGATCGTTGATGCTTATAGACACGATGCAGCGTCTGCAAGGACTGCCTGCATGTCCAGGAGATAGTGAAAACTCTTCCCTTCAGGAAGGGAGGTGTTTAGGAAATAGTAAGTCAGTTGTCATTATCGATCTTGATGAAGCTAAAAACGATAACGAATTATGCTCTAGGGATGCAATGGGAAGGAATGTAGATTCTGTAAATTGTCTGGAGCTGGATTCCGGTGACATGGGTAAGCATCAAGAGGAAACATGTGATGTTAGTGAGACAATTCCCGAGACTCCAGATGCCAAGAGAACTTTGTCAAATGAAGGAGCCAATGCCACTGAAACATCAAATCCTATTGAGCAGACTTCTTCATTGGCTATAGATGCTTGTGATAACGACATGAGAGATGAAGAACTTAGCCCCCGTTTAACTAATTTGATTATAAGTGGTGTTGTTCCTGAGTCTCCCATTGATGAAAGAGGGCAATCAAAAAACAGGTTTGTCATTCGAGGTTGTATTTCACCTGTTCATCTCCAGGAAGAACATGATGTTCCCTCTTTAAGTTGTAGGGAAACCGAAAAAGTCATTGTTGATAGTGGCACCGGTAAGAATATACGTACTTCCCCTGTTAATGAAACCCAAACCCCTTTGCTTGAGTTGAAGAATTGTGCAATTAGAAGAGGACGTGTCTTTGTTTCTCAAATTGAGGAAGGGCATATACATAATGTTGACCCAAGCTTCAGTGAAGAATCACATCCAAGTTGTGGTGAAAGATCTGTAAGCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGGAAAGTTGAAGATACTGAAAGTAACATGAATcagaaaaagaataatattttttattcaacagCGAACTTTTCAAAACCATCTCTTGCCTCCAATCCCAAACGATATAAGCATTGCCAAGGTATAAGGAAACCAGCGAATGTGAGAGACTTCATTGAGGAGGAAGCCGAGGTATCTTCAGATGCCTCTGTATCTAATGATGAAGATGTCGAGGATGGAAATTCTTGTGACAGTTTCATAGATGACCGAATCAATGCTACAGCAGCCAGTCAGCCTGAAGCTAGTAGAATAGACATGATGGCAATTTACAGGCGTTCGTTGCTCAGTCAAACACCTATTAGTGGAGGGCCAAAGTTTTCCACTACCTTCAGTCCTGACAATGTGACTATGTCAGCCAGTATTGGTGAAAGTGGTAATTTGTCAGGCAAGACAATGAGTCGTTTCCAGACAGGACAGACCAGTCATTCAGCTAATCGAACTTCCGAATCGGTATGTCTCGACCAGATGACCTCAGAAACAATGCCTTCAACTAGTTTTCCAACAGAGACAGATATAAGAAGCCGTAAAAGAAGATTAACATTTCATCATTCTGGACACTTTCCAAGTATGAATCTTGAACCAGAATTTGCACTTCAATCAAAGAAAGAATCAGTGAATGGCAATGCAACTATTGATGTTCTATGTGATGATCAATTTTATAACGATATTGATCTTGATGAGTTGGAGGCGCAAGCAACTTCGATTCTGAAACAGAAATTAGATTTGTCAATTCTGAAACAAGATATAAACCCTCAATCTCTTGAAGCGAACCTTGATGTTAGTACGTCTCCATCATTCGACCTTGGTATATGA 3723 0.3965 MDSNNPYEIDDDDYEGLDWEAVVKAADAACQMQSEAKSNGNEAEKVYQKGKGKQSTLDNFVRISKKETETIQLKENDVEESTCTHLIDIEAAKTWIYPVNVPLRDYQFHITQTALFQNTMVALPTGLGKTLIAAVVMFNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIVGIPQEWAVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIQSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPVQLRILALTATPGSKQQTVQDVINNLHISKLEHRNETDHDVISYVHDRKIELIQVAMGQDAVEINNKFLEVIRPIVARLTKIGAIQNRDYRTLSPCVLLEMREKFRQGHLQDLSHINSGDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGIFAKYMSKNEDILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMVALGGTGDQVRATEFIGQSSGKTMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVDILWLSILVLKGYLKKKAKGKTISKHMRNGGVNSFVFHPSPRMIPHVLKPEVQYVELSIEKFIPRQTNVIEDHLQISASKDRLTLDEIGLLEKYFPSTGENRCRLSLIAFPHFQTFPSRVHKVKHSYGSLMLIDTMQRLQGLPACPGDSENSSLQEGRCLGNSKSVVIIDLDEAKNDNELCSRDAMGRNVDSVNCLELDSGDMGKHQEETCDVSETIPETPDAKRTLSNEGANATETSNPIEQTSSLAIDACDNDMRDEELSPRLTNLIISGVVPESPIDERGQSKNRFVIRGCISPVHLQEEHDVPSLSCRETEKVIVDSGTGKNIRTSPVNETQTPLLELKNCAIRRGRVFVSQIEEGHIHNVDPSFSEESHPSCGERSVSIKPARKFKRLRKVEDTESNMNQKKNNIFYSTANFSKPSLASNPKRYKHCQGIRKPANVRDFIEEEAEVSSDASVSNDEDVEDGNSCDSFIDDRINATAASQPEASRIDMMAIYRRSLLSQTPISGGPKFSTTFSPDNVTMSASIGESGNLSGKTMSRFQTGQTSHSANRTSESVCLDQMTSETMPSTSFPTETDIRSRKRRLTFHHSGHFPSMNLEPEFALQSKKESVNGNATIDVLCDDQFYNDIDLDELEAQATSILKQKLDLSILKQDINPQSLEANLDVSTSPSFDLGI 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04547 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 567 IPR027417 -
Tsu01g04547 1240 CDD FANCM_ID 310 424 - -
Tsu01g04547 1240 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 18 728 - -
Tsu01g04547 1240 Gene3D hef helicase domain 307 429 - -
Tsu01g04547 1240 CDD DEXDc_FANCM 101 282 IPR044749 GO:0005524
Tsu01g04547 1240 MobiDBLite consensus disorder prediction 769 805 - -
Tsu01g04547 1240 CDD SF2_C_FANCM_Hef 434 567 - -
Tsu01g04547 1240 SMART ultradead3 99 292 IPR014001 -
Tsu01g04547 1240 Pfam Helicase conserved C-terminal domain 443 559 IPR001650 -
Tsu01g04547 1240 Pfam Type III restriction enzyme, res subunit 116 260 IPR006935 GO:0003677|GO:0005524|GO:0016787
Tsu01g04547 1240 SMART helicmild6 470 560 IPR001650 -
Tsu01g04547 1240 Gene3D - 430 583 IPR027417 -
Tsu01g04547 1240 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 436 595 IPR001650 -
Tsu01g04547 1240 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 278 IPR014001 -
Tsu01g04547 1240 PANTHER FANCONI ANEMIA GROUP M PROTEIN 18 728 IPR039686 GO:0006281|GO:0043138
Tsu01g04547 1240 Gene3D - 99 293 IPR027417 -
Tsu01g04547 1240 MobiDBLite consensus disorder prediction 785 805 - -
Tsu01g04547 1240 PANTHER FANCONI ANEMIA GROUP M PROTEIN 770 1204 IPR039686 GO:0006281|GO:0043138
Tsu01g04547 1240 MobiDBLite consensus disorder prediction 1094 1121 - -
Tsu01g04547 1240 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 770 1204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04547 Tsu-Chr1 53024777 53036507 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04547 391 558 Eukaryotic Initiation Factors Gene Family AT3G13920 26.923 5.74e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04547 K10896 - gmx:100820078 1555.81