Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04545 ATGCATTTGGCATCTGCTGCGTTCATCGAGCCTCTTCCAGTTGTAGAATTTGTTGGTCAGCTGCTAGGAAAAGACGTGCTGTCAAGGCCATTGTCTGATGCTGATCGAATCAAGATTAAGAAAGGCCATAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTAAGAAGAAAATATCGTGTTTCAGGGTTAACTTCTCAACCAACAAGAGAacttgtGTTTCACTATTCAATATACTCACCTTCCTTGCCTTCAAGTAGGCAACCAAAAGAAGGCTAA 282 0.4078 MHLASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKGHRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFHYSIYSPSLPSSRQPKEG 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04545 93 CDD PAZ_argonaute_like 11 75 - -
Tsu01g04545 93 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 76 - -
Tsu01g04545 93 Gene3D paz domain 5 84 - -
Tsu01g04545 93 SUPERFAMILY PAZ domain 6 77 IPR036085 GO:0005515
Tsu01g04545 93 ProSiteProfiles PAZ domain profile. 12 75 IPR003100 GO:0005515
Tsu01g04545 93 PANTHER PROTEIN ARGONAUTE 10 2 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04545 Tsu-Chr1 53014604 53015059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04545 1 75 Eukaryotic Initiation Factors Gene Family AT5G43810 81.333 5.91e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04545 K11593 - gmx:100816999 136.732