Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04541 atggggatgaagtgcaaagacctGAATGCAAGTCCAGAAATAGGGGTGGAGAATttccagtttgaggtggagccttTCACTGATAAGGAGGGAACAGATGAGCAGAATCTAATCCCTGAAGAGAGTGGAActgaagaggtgcaagactcggaaccaaagaacttcagggaaGCAACAGAAAGCATAGAGGGCAAGgactgGTTTGTTTCAAGAAACCCCCTTTCAGTATTCAGCAGAGAACAAGAACagTATCAAAGTTTCTTCTGGGAGATGGATGCAACAAAGAACAGGAATTTCCCTTTTTCCAACAAACAAGAAgagGATGATTATTGGTTTCATGAATACATCGTTAGTCTGCTGTCAGTTGAGGAGGCTGTCTCTATTGATGAattgcttggcaagaaagaaccAGATGCTGGCTATGCATGTCATCACTCACTTGAGCCATCTAGTCAACATACAAAGATTGAGGTTCCACAAGCTATGCAATATAATCCTTGTAGCTCCGAACAAGTCGTAACAAGCTGTGGTATCTCACCTCAGATTGGGACAACATCACCCCATAAAAACATTTGCCGTGATTTCGACCTCAACAAAGCACCTTCTTTTGACCCAACCGAGGATGGAGGGTCCTCCAATTCACACTTACTTGCTCCTGAAGTTGTAACAAGTTGTGGTACCTCACCTCTAATTGGGACAACATCACCTCATGAAAACATTCGCCATGATTTCAACCTCAACAAAGCACCTTCTTTTGACCCAACCGAGGATGGAGGGTCCTCCAATTCACACTTACTTGCTCCTGAAGTTGTAACAAGGTGTGATACTGATACCTCACCTCATGAAAACATTCGTCGTGATTTCGACCTCAACAAAAACCCTTCTGTCGATTTCAATCATATGCTCGGGATCAGAAACTGCAAGTGTGAGAGGTTAAAGTGTTTGAGCCCTTATTGTGAGTGTTTTTCTGATGGAGGCAACTGCACAGAAACTTGCACATGTGAAGGGTGCGAAAATGTAACAAAATCTGATCTGAAAGAATCAGAAGCATAG 1053 0.3799 MGMKCKDLNASPEIGVENFQFEVEPFTDKEGTDEQNLIPEESGTEEVQDSEPKNFREATESIEGKDWFVSRNPLSVFSREQEQYQSFFWEMDATKNRNFPFSNKQEEDDYWFHEYIVSLLSVEEAVSIDELLGKKEPDAGYACHHSLEPSSQHTKIEVPQAMQYNPCSSEQVVTSCGISPQIGTTSPHKNICRDFDLNKAPSFDPTEDGGSSNSHLLAPEVVTSCGTSPLIGTTSPHENIRHDFNLNKAPSFDPTEDGGSSNSHLLAPEVVTRCDTDTSPHENIRRDFDLNKNPSVDFNHMLGIRNCKCERLKCLSPYCECFSDGGNCTETCTCEGCENVTKSDLKESEA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04541 350 MobiDBLite consensus disorder prediction 24 53 - -
Tsu01g04541 350 ProSiteProfiles CRC domain profile. 303 350 IPR005172 -
Tsu01g04541 350 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 305 339 IPR005172 -
Tsu01g04541 350 SMART CXC_2 302 343 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04541 Tsu-Chr1 52987984 52991747 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04541 260 340 CPP Transcription Factor Family AT3G22780 32.099 4.97e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tsu01g04541 TCR 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04541 - K21776 ini:109163639 54.299