Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04534 ATGGATGTAACAGAGAACAAGAAAACCCCTGTTTCCAACTTACAAGAAGAGAATGATTCTTTGTTTAACTACCTCAATAGTCTATCACTTTTAAAGACCAAAGAATGTGTTGAAGCTACTCTGACGTTGAACTCACTTGGCATGGATTATTTTCTTCACGCGTCACCCGATGTGACCATTTACGAGGATCCCATAGTCCTTATGAGGAATAACATTTTGAACACATCAAAGGCTAAAGTTTCGTCCgaagatataaataaaatatatacacatgaAGAAGCTCTTAATTATTCTAATCATGCATGTCATAACTCACTTGAGTCATCTAGTCAACATACAAAGATCGATCTTCCACAAGCTATACATGATAATCCGTGTAGCTCCGAACAACGTCCTCTAATTTCAAGTGAAGAGGCTAACTGGGCTCTTGAATTACTTGGCATGCAAGTGCCAAATATTACCAATGTACAAGACGATTCTCAGAAAGATTCAGTGAAGGAGTGTGGAACATATACTCGGAAAGTAGGTCAGGTTGAGGCAATTATTGAAGGAGCGGATTGTGATTACAATAACTTAAGTAGTATAACACAATCAATGAATCTGCTGCCACAATCTACCACTaacattaattataaaatgcaaaatgttgAACATGTTGCTTCTAGTTCAAAACATGAAATTGAAGATAATCCTTCTGAACCTATAGCTGCAACAGACAGAAATCAAACACGGAACAATCTTGCTAATGTTGCTTTAATGGATAGCAATCCAATTGCGAGGGGGATCGATCATGAGCTTGCAAATATTAAACGCAGTATAACAAGGTCCTGTTTAAGCTATCAACCTGATATTACCAGTTTGCAAATGAACAATTCCGTTTATACTTCAAACATTAGTTCCTGTACAACAAAATCTGATGAGATGAATGCTATTAATGAAAAGCCATTGCTTCATAGAAAAAACACAAGTTATTCACAGATGTGTGTATTGCCACGAAATGATATTTACTTAAATGAAAAGATGTCTTCTGGAAGGAAACCTGAATCACCGAGCTGCACTTCTTTGCATCTTTCTGCAAGTCAAGGCCATCACTTATCGACAGTCCCTGCACCAATGGAAAGACATTTGGAGCCATCTGAGAATGATGATTTCACCAAGTCTTCAGTTCACATTCCTGGTGAAGATTTATGTAGGAGTACCCCCGACCTGATGAGTAGACTGCAATTTAACGACCTAACGAATAAACTATTGGATGAAAACATGAAAAGGACGTCGAAAGTGCATAGTAAAGATTCGATTGGTCTAGTTTCTTCTGGTTCAGAACATAAAATGGAAGAAGAAAGTGCTGATTTCTATCAGAATATCCCcaaaaagaagaggaaaACTAACACCAATGTTCGATTTTTCAGGAAAAGGTCCGATCTAACTGGGGAAGGAGGGGCATGTAGAAGCTGTAAATGTAAAAAATCAAGGTGTTTGAAAAATTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGGACCTTGCTCATGTATAGACTGCTCGAATAAAGGAGATAATGAAGATACAGTTCTGCAAGCTCGCAGGAAGAATGATTCTAAAGTCGTAACAAATTCTAATTCGTCACCACAATTTGGGGAGGATCCTAACATAACATTAGCTTCAAAGCTACAGAAAAGAGTATGTAATTGCAATAAATCAGGCTGCCAGAGGAAATATTGCGCATGCTTTAAGGATGGTGTTGGTTGCTCTCCAATTTGTAAATGTCAAgggtgcaaaaatatatatgGTAGAAAGAATAGTACAGCTGAAACTAAATCTGAGCTTGAAGAAACAGAAGCATTACAAATTTCCAGGACATTGCCTCCATTATCATATTCATCGATGGGAAAGCCGCCACAGATATCTTGTTCTGAATTGTTTAGCAGCCAAAACCAGGAGCTTGTGGAATCAAATGCTACTGGATCAATAACTATTCCAGATGATGTAAATTGCATCAATACTTATTCTGGCAAGTGGATATGTATTTCTAATCCAGAATGCGAAAATGCCGTTGAAACATCTCCTACTTGA 2076 0.3656 MDVTENKKTPVSNLQEENDSLFNYLNSLSLLKTKECVEATLTLNSLGMDYFLHASPDVTIYEDPIVLMRNNILNTSKAKVSSEDINKIYTHEEALNYSNHACHNSLESSSQHTKIDLPQAIHDNPCSSEQRPLISSEEANWALELLGMQVPNITNVQDDSQKDSVKECGTYTRKVGQVEAIIEGADCDYNNLSSITQSMNLLPQSTTNINYKMQNVEHVASSSKHEIEDNPSEPIAATDRNQTRNNLANVALMDSNPIARGIDHELANIKRSITRSCLSYQPDITSLQMNNSVYTSNISSCTTKSDEMNAINEKPLLHRKNTSYSQMCVLPRNDIYLNEKMSSGRKPESPSCTSLHLSASQGHHLSTVPAPMERHLEPSENDDFTKSSVHIPGEDLCRSTPDLMSRLQFNDLTNKLLDENMKRTSKVHSKDSIGLVSSGSEHKMEEESADFYQNIPKKKRKTNTNVRFFRKRSDLTGEGGACRSCKCKKSRCLKNYCECFAAGVYCIGPCSCIDCSNKGDNEDTVLQARRKNDSKVVTNSNSSPQFGEDPNITLASKLQKRVCNCNKSGCQRKYCACFKDGVGCSPICKCQGCKNIYGRKNSTAETKSELEETEALQISRTLPPLSYSSMGKPPQISCSELFSSQNQELVESNATGSITIPDDVNCINTYSGKWICISNPECENAVETSPT 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04534 691 MobiDBLite consensus disorder prediction 344 364 - -
Tsu01g04534 691 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 561 595 IPR005172 -
Tsu01g04534 691 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 483 518 IPR005172 -
Tsu01g04534 691 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 2 614 IPR044522 GO:0003700
Tsu01g04534 691 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 2 614 - -
Tsu01g04534 691 MobiDBLite consensus disorder prediction 342 364 - -
Tsu01g04534 691 ProSiteProfiles CRC domain profile. 481 598 IPR005172 -
Tsu01g04534 691 SMART CXC_2 558 599 IPR033467 -
Tsu01g04534 691 SMART CXC_2 480 521 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04534 Tsu-Chr1 52962230 52965379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04534 424 614 CPP Transcription Factor Family AT3G22780 43.137 8.14e-43 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tsu01g04534 TCR 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04534 - - mtr:MTR_1g103230 581.252