Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04533 ATGTTCAAACCTTTTAGTGCTAATAATGCCACTCTTTTAGTCTTTGGTAATAGGCGTTTGTTGTCCACTCAAACACCGATTAGTGGAGGGCAGAGCCGGGAGTTCTCGGCGACCTTCAATCCTGACAATGTGACTAGGACAGCCAAGATTGGTGAAAGTGCTACTAAAGGTTTAACTCAGTCACCAGTTCACATTGCTATGTCTTGTGCAAGGAAATCTGAATCGCCAAGCAGTACTTCTTCTTTGCTTCTTTCTACCAGCCAAGGGCATCGCCTATCACTTGTCCCTGCATCAACAGAGAGACATTTGGGGCCATCCGAGATTAAAGTTCAAGAAACTAAAGATTTCACTCAATCATCAGTTCAAATTCCTGGTGTCGTTTCATTTGAAGTCAAAACCTCAGATTTCATTCCATCAATAGCTAACGTTGTTGATGTTGGAAGTGCATTCAAGTCAAAACAACATTTCAATCACAGCAACGATGTTGATGCTGGAAGGACATTCAAGTCAAAACCTGACATCAACAGTGTTACCTATTGCATCTGGGAGCCAAGGTATGTTTGCAAATCTTGGGATGCTATTATTGATAGCTCACATTTCGCCCAAATGTATGAACGTCGTGCATGTTATAATTCTAAACTTGTTGGTCTATATGTTGAAAATTGCACGGATGAAAGTCGTTCTTATTTCTTGGAATTTAAAGATGGTTTGAATGGCCAATTTGAAAGGTTTGATTTGGGAATACCTCAATTGGGAAATATAATGGGTGCTTGCAATGGCATTATGATGCTTTTGACTAATCGTGGACGACTTTTCGTTGTAAACCCTATTCTCAAGCGTTGGCTTAGGATTCCCAAACAAATCTACTCTCAGTTGAAGAGGCTGTCTCCTATTGATGAATTGCTTGGCAAGCAAAAACCAGATGTTGGCTATGTACAAGATGGCGCTACGAAGAATTCAGTTCAACCATCTCCTATTGCCAATCATGGACCAAGTGGTTTGTCAGGTTTGAACCAAGATGTTGGCTATGTAAAAGATGTCTCTATGAAGGGTTCAGTTGATGGTGGAAGGAAACCTGAACTACCGAGCTGCGCTTCTTCTTTGCATGAGAAGAATGCTAGTAATGAACAATCATTGCTTCCTTCTCATTACACTAGTGATTCACAAAGGTGTGTTTTGCCAATAAATAATTCTTATGTGATTGCACTTCCAGCCTTAAATAAGTCTTCTGCAACGGAAACTGAATCATCAAGCAACACTTCTTCTTTGCTTCTTTTTGCCAGCGAAGAGCATTGCCTATCGCAGGTCCCTGCCTCAGCGGAAAGATATTTGGGGCCATCCAAGATTGAAGTTCCGACTACTAAAGATTTCACTCAGTCATTAGTTCACATTGCTAGGTCTTCTGCAAGGAAACCTGAATCGCCAAGCAGTCCTTCTTGCCTTCTTCCTGCCAGCCAAGGGCATCGCCTATCGCTGATCCCTACATCAACAGAAAGACATTTTGGGCCATTCGAGATTGAAGTTCAGGCTACTAAACATTTCAGTCAGTCACCAGTTCACATTGCTAGGTCTTCTGCAAGGAAACCTGAATCACCAAGTGGTACTTCTTCTTTGCTTCTTTCTGCCGGCCAAGGACATCGCCTACCGCAGGTCCCTGCATCAACGGAGAGACATTTAGGGCCATCTGTGTTTCAATTTCAGGCTACTAAAGACTTCACTCCGTCATCAGTTCACATTGCGAGGCCTTCTACAAGGAAACTTGAATCGCCAAGCAGTACTTCTTCTTTGCTTCTTTCTGACAGCCAAAGGCATCACCTATCGCCGATTCCTGCATCAATGGAAAGACATTTGGGGCCGTCTGAGATTGAAGTTCAGGCTACTAAGAATTTCACTCAGTCATCAGTTCACATTACTGGTGAAAATTTCGGTCAGAATACCCCCAAAAGGAAGAGGAAAGTGCATAGTTCTGATCTAACTGAGGAAAGAGGGTCATGCAGAAACTGTAACTGTATGATGTCAAACTGTTTGAAACCTTATTGTGAATGCTTTGCTGCCGGAGTCTACTGCGCAGAACCTTGCACATGTAAAGAGTGCTTAAATAAACCTATTGATGAATATATAACACTTCTGCAAACTCGCAGGAAGACTGAGTCTAGCGGTCCGCACTTACTTGTTCCTAAAGTCATAAGAAGTCCTGACACCTCACCTCAAATTGAGGATAACCCCAACAAAAGTCCAGCATCAAAGATATGCAAAACAGTATGCCATTGCAAGAAAATAGGCTGCCATATGAAATCTTGTTCTTGTTCTAAGATGTCATACATGGGGACTGCACCTCTCTTTAGTGTAGACCATTATGTAGACAACTTTGTCAAAGTTGTAAGAAATGCAGCAATAACGAAAGATCTCTCTTTCAAACGTATATTGTcgaaaagTGTTACTTGttgtattgattttgaattgttGGAGCTGAGCTGTGTCGAATTGAGCAGGTAA 2496 0.4163 MFKPFSANNATLLVFGNRRLLSTQTPISGGQSREFSATFNPDNVTRTAKIGESATKGLTQSPVHIAMSCARKSESPSSTSSLLLSTSQGHRLSLVPASTERHLGPSEIKVQETKDFTQSSVQIPGVVSFEVKTSDFIPSIANVVDVGSAFKSKQHFNHSNDVDAGRTFKSKPDINSVTYCIWEPRYVCKSWDAIIDSSHFAQMYERRACYNSKLVGLYVENCTDESRSYFLEFKDGLNGQFERFDLGIPQLGNIMGACNGIMMLLTNRGRLFVVNPILKRWLRIPKQIYSQLKRLSPIDELLGKQKPDVGYVQDGATKNSVQPSPIANHGPSGLSGLNQDVGYVKDVSMKGSVDGGRKPELPSCASSLHEKNASNEQSLLPSHYTSDSQRCVLPINNSYVIALPALNKSSATETESSSNTSSLLLFASEEHCLSQVPASAERYLGPSKIEVPTTKDFTQSLVHIARSSARKPESPSSPSCLLPASQGHRLSLIPTSTERHFGPFEIEVQATKHFSQSPVHIARSSARKPESPSGTSSLLLSAGQGHRLPQVPASTERHLGPSVFQFQATKDFTPSSVHIARPSTRKLESPSSTSSLLLSDSQRHHLSPIPASMERHLGPSEIEVQATKNFTQSSVHITGENFGQNTPKRKRKVHSSDLTEERGSCRNCNCMMSNCLKPYCECFAAGVYCAEPCTCKECLNKPIDEYITLLQTRRKTESSGPHLLVPKVIRSPDTSPQIEDNPNKSPASKICKTVCHCKKIGCHMKSCSCSKMSYMGTAPLFSVDHYVDNFVKVVRNAAITKDLSFKRILSKSVTCCIDFELLELSCVELSR 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04533 831 SMART CXC_2 663 704 IPR033467 -
Tsu01g04533 831 ProSiteProfiles CRC domain profile. 664 792 IPR005172 -
Tsu01g04533 831 MobiDBLite consensus disorder prediction 349 376 - -
Tsu01g04533 831 MobiDBLite consensus disorder prediction 515 554 - -
Tsu01g04533 831 MobiDBLite consensus disorder prediction 515 543 - -
Tsu01g04533 831 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 666 701 IPR005172 -
Tsu01g04533 831 MobiDBLite consensus disorder prediction 315 335 - -
Tsu01g04533 831 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 527 769 - -
Tsu01g04533 831 MobiDBLite consensus disorder prediction 580 602 - -
Tsu01g04533 831 MobiDBLite consensus disorder prediction 313 337 - -
Tsu01g04533 831 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 527 769 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04533 Tsu-Chr1 52942402 52962138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04533 650 769 CPP Transcription Factor Family AT3G22780 50.833 4.96e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tsu01g04533 TCR 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04533 - - gmx:100804447 174.481