LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g04530	ATGGAATCCTCTTCTAGTTATGGCCATACCATAAAATTCTTAGTTCTATTCCTTACCATTCTCAACTCTATCAATCCCTCATACCAATCTATACCACAACTAAATCCAAGACTCATCAAAGCATACACAGCACTCCAAGCATGGAAACAAACATTCACCTCTGACCCTAAAAACTTCACCTCAAATTGGTATGGCCCAAATGTATGCAACTACACAGGTATCTACTGTGCACCATCACCAGATGATCCCTACATCTACACAGTTGCTGGTATAGACATAAACCATGCAAAAATATCAGGTTCATTACCAGAAGAACTTGGTCTTTTAACAGATTTAGCTCTTTTCCATATAAACTCAAACAGTTTCTATGGTTCTATACCAAACAGTTTCACTTATCTTCACCGTCTCCACGAACTTGATATCAGTAACAATAAATTCTCAGGATCATTTCCGGAACCGGTTCTCTGCATTCCTTCATTAAAATTCTTAGACATAAGATTCAACAATTTTCAAGGAAATGTTCCTGAAAAACTTTTTGACCTTAAACTTGATGCTCTTTttattaacaataataaattcCAATTTTCTTTGCCTGAAAATTTTGGAAACATGCCGGCTTCTGTTGTTGTGTTCGCGAATAATGATATTAAAGGTTGTATTCCATCGAGCGTGGTGAATATGAAGGATACAATTAACGAGATTATTATGACGGATAGCGGAATGAAAGGCTGTTTACCGGACGAAATCGGGAAATTGGATAAAGTGACAGTGTTTGATGTTAGTTTTAATGAGTTTGTTGGTGAATTGCCTGAATCTATTGGTGAAATGAAGAGTTTGGAAGTGTTGAATGTGGCGCATAATCGATTTTCCGGTGTGGTTCCGGAGAGTATTTGTAGGTTGCCAAGGTTGGAGAATTTTACATATTCTTATAATTTCTTTAGTGGTGAATCGGAAAGTTGTGTTAAGATGGGTAATCATAAGGATGATAAGAAGAATTCCAATAAACAACTACTTCACCATGGTGGGAACATTATGCAAGAGAATTGGAGGGTGGTAATCAAACATGTTTACCGAGAGGCGAACAAGATTACTGAGGGTTTGACCTCTTTTGCTTGTGTCATAAAAGTTCCACTGCCTTTATATGAGCTACCGCCGACTGAGGTTGCACAAGTGTATCATGATGATTTGATTGGAGTCTCTGCTCCTCGTTTAGTTGTTTTATCATTGGGCTTAAGCCTCTTTCATTCTAAAAAAAGTAACATTAATGATATAAAAAGTGAACCACCCACCATGGCTGTTGGAAAGAACAAACGTATCTCAAAGGGGAAGAAGGGTGGCAAGAAGAAAGCAGCTGATCCCTTTGCCAAGAAGGATTGGTATGACATTAAGGCTCCTTCAGTTTTCCAAGTGAAAAATGTTGGCAAAACCCTCGTATCTCGTACTCAGGGTACCAAGATTGCTTCAGATGGACTCAAACATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGATGAGGAACATGCTTTCAGGAAGATCAGGTTGAGAGCTGAAGATGTTCAAGGGAAGAATCTTTTGACAAATTTCTGGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAATCACTAATTGAAGCCCACGTGGATGTGAAGACTACTGATAATTACACATTGAGAATGTTTTGCATTGGATTTACCAAGAGGAGAACTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGCCAGATTAAGCAGATCCGTAGGAAGATGAGAGAGATCATGGTCAACCAAGCAACATCCTGTGATTTGAAGGAATTGGTCCGTAAGTTCATTCCAGAAATGATTGGAAAAGAAATTGAGAAGGCCACATCTAGTATTTACCCTTTGCAGAATGTGTTCATTCGTAAAGTCAAGATCCTTAAAGCTCCTAAGTTTGATCTTGGAAAATTGATGgagGTTCACGGTGATTACTCTGAGGACATTGGCACAAAGGTAGACAGACCTGCCGAAGAAACCGTGGCAGAGGAACCTGTTGAAATTGTTGGAGCTTGA	2076	0.3897	MESSSSYGHTIKFLVLFLTILNSINPSYQSIPQLNPRLIKAYTALQAWKQTFTSDPKNFTSNWYGPNVCNYTGIYCAPSPDDPYIYTVAGIDINHAKISGSLPEELGLLTDLALFHINSNSFYGSIPNSFTYLHRLHELDISNNKFSGSFPEPVLCIPSLKFLDIRFNNFQGNVPEKLFDLKLDALFINNNKFQFSLPENFGNMPASVVVFANNDIKGCIPSSVVNMKDTINEIIMTDSGMKGCLPDEIGKLDKVTVFDVSFNEFVGELPESIGEMKSLEVLNVAHNRFSGVVPESICRLPRLENFTYSYNFFSGESESCVKMGNHKDDKKNSNKQLLHHGGNIMQENWRVVIKHVYREANKITEGLTSFACVIKVPLPLYELPPTEVAQVYHDDLIGVSAPRLVVLSLGLSLFHSKKSNINDIKSEPPTMAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEEHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRMFCIGFTKRRTNQVKRTCYAQSSQIKQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDIGTKVDRPAEETVAEEPVEIVGA	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g04530	691	Gene3D	Ribonuclease Inhibitor	208	343	IPR032675	-
	Tsu01g04530	691	ProSitePatterns	Ribosomal protein S3Ae signature.	491	503	IPR018281	GO:0003735\|GO:0005840\|GO:0006412
	Tsu01g04530	691	MobiDBLite	consensus disorder prediction	425	450	-	-
	Tsu01g04530	691	Hamap	40S ribosomal protein S1 [RPS3A].	431	686	IPR027500	GO:0003735\|GO:0005840\|GO:0006412
	Tsu01g04530	691	SUPERFAMILY	L domain-like	41	325	-	-
	Tsu01g04530	691	SMART	Ribosomal_S3Ae_2	445	651	IPR001593	GO:0003735\|GO:0005840\|GO:0006412
	Tsu01g04530	691	Pfam	Ribosomal S3Ae family	446	651	IPR001593	GO:0003735\|GO:0005840\|GO:0006412
	Tsu01g04530	691	PANTHER	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED	22	333	-	-
	Tsu01g04530	691	Pfam	Leucine rich repeat N-terminal domain	43	76	IPR013210	-
	Tsu01g04530	691	Gene3D	Ribonuclease Inhibitor	40	207	IPR032675	-
	Tsu01g04530	691	PANTHER	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6	22	333	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g04530	Tsu-Chr1	52926448	52933793	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g04530	431	691	Cytoplasmic Ribosomal Protein Gene Family	AT4G34670	83.969	1.30e-154	446

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g04530	-		K02984	gmx:100813811	498.434