Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04529 ATGGGAAAAAAAGGTAAATGGCTTAAAAATTTCTTGACAGGGAAGAAGgacaaagaaaaagagaaggaaaatcagaatttttcaaATGGAACAGAAAATCCTACTACTCCAgtttcaacaacaacaaaggaGAAAAAGAGATGGAGTTTTAGAAGATCATCAGCAACAGCTACACCAACAGTTTCCAAGGAATTGAATGCCTCAGATGTTACTTCTTCAGTGACAGTGCAAAGTACTGTCACTGATATTCAGAATGAGCAGAGGAATCATGCCATGGCTGTGGCTGTTGCTACTGCCGCAGCAGCTGAGGCAGCGGTTGCGGCTGCACAAGCTGCGGCTGCTGTGATCCGCTTGACTTCTGATTCAAATGAGATTTCTAGAAGTATTGAAGATTCTGCTGCTGTTAAAATTCAATGCGTCTTTCGATCTTACTTGGCAAGAAAGGCATTGTGTGCTCTAAGAGGATTAGTGAAGTTGCAGGCATTGATAAGGGGTCACTTGGTGAGAAAACAGGCTAAGGCGACACTTAGATGTATGCAAGCTTTGGTCACAGCACAAGCTAGAGCTCGTGCTCAAAGGATCCGAATGGTGTCGGAAGGAAAGCCTAATCCAAATCAATCAACTCACAGAGATGCTATGGAAAATGACTTGTTCAGGCAAATATATAATGAAATGGACAGAAGTTTGGAGGACAACATCAAGATTGTGGAAATGGATTTTTGTGAATCAAAAGGAAACTCTACAAGCCGAAGCAGCAGCGTATATAATCATGGACAATATTATGAACAATCTGAACATAGATATTCAACAAACGGTTCTTACTCAAAAGATGAAAACTACAAAGTCTCACCAGCTCCATCAGCTTTAACAGAATTGAGTCCAAAAGCATGCAGTGGCCATTTTGAAGATAGTTTCAGTACAGCTCAAAACAGCCCTCAATGCTATTCTGCAAGATCGAAAACCGAtggttcaatttcaaatcaTCCATTTTCTTTCCCTAGGCCATCTTATGCAGAACCTATGTCCTATGATTACCCTTTATATCCAAGTTACATGGCTAATACAGAATCATCAAGGGCTAAAGTTAGATCACAAAGTGCACCAAAACAAAGGCCAGATACATTTGAGAAGCAACCAAGCCGGCGAAGAATTTCGGTTGAGGGAAGAAATGTACCTAGGCCAGTGAGGATGCAAAGGTCATCTTCACATGTAGGTGCAGCTGCTCAGAATTACCATTATCCATGGTCAATCAAGCTTGATAGATCCGCAGTTTCGCTTAAAGACAGCGAGTGTGGCTCGACAAGTACAATGCTCACAAATACTAATTACTGCAGATCCCTTGTTGCATATGATCCAGATGGAGATAGGTACTAA 1374 0.3959 MGKKGKWLKNFLTGKKDKEKEKENQNFSNGTENPTTPVSTTTKEKKRWSFRRSSATATPTVSKELNASDVTSSVTVQSTVTDIQNEQRNHAMAVAVATAAAAEAAVAAAQAAAAVIRLTSDSNEISRSIEDSAAVKIQCVFRSYLARKALCALRGLVKLQALIRGHLVRKQAKATLRCMQALVTAQARARAQRIRMVSEGKPNPNQSTHRDAMENDLFRQIYNEMDRSLEDNIKIVEMDFCESKGNSTSRSSSVYNHGQYYEQSEHRYSTNGSYSKDENYKVSPAPSALTELSPKACSGHFEDSFSTAQNSPQCYSARSKTDGSISNHPFSFPRPSYAEPMSYDYPLYPSYMANTESSRAKVRSQSAPKQRPDTFEKQPSRRRISVEGRNVPRPVRMQRSSSHVGAAAQNYHYPWSIKLDRSAVSLKDSECGSTSTMLTNTNYCRSLVAYDPDGDRY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04529 457 ProSiteProfiles IQ motif profile. 130 158 IPR000048 GO:0005515
Tsu01g04529 457 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 434 - -
Tsu01g04529 457 MobiDBLite consensus disorder prediction 356 373 - -
Tsu01g04529 457 MobiDBLite consensus disorder prediction 27 43 - -
Tsu01g04529 457 MobiDBLite consensus disorder prediction 356 383 - -
Tsu01g04529 457 Pfam IQ calmodulin-binding motif 132 150 IPR000048 GO:0005515
Tsu01g04529 457 Pfam IQ calmodulin-binding motif 157 173 IPR000048 GO:0005515
Tsu01g04529 457 MobiDBLite consensus disorder prediction 10 26 - -
Tsu01g04529 457 ProSiteProfiles IQ motif profile. 154 181 IPR000048 GO:0005515
Tsu01g04529 457 PANTHER IQ-DOMAIN 5-RELATED 1 434 - -
Tsu01g04529 457 MobiDBLite consensus disorder prediction 1 64 - -
Tsu01g04529 457 Gene3D - 130 183 - -
Tsu01g04529 457 Pfam Protein of unknown function (DUF4005) 311 388 IPR025064 -
Tsu01g04529 457 SMART iq_5 152 173 IPR000048 GO:0005515
Tsu01g04529 457 SMART iq_5 129 151 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04529 Tsu-Chr1 52919311 52921961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04529 1 447 IQD Protein Family AT4G14750 45.161 2.87e-104 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04529 - - gmx:100817667 621.698