Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04528 ATGGCTGGTAGGTTACCTGGTGTTGGATTGTCACCAAGAAAAAGATCAGAAAATCATCACAATAGACATGAACAATATGGTACCTACAGAGACTCTTCCTATCTAAGGGAATCATTAGAGACACCATGGACTTCAATGACTACTACCTTAGATGAAAGTGCTTTCAAAGCCAAACAAAGACTTCAGAAGAAACTTGGTTACTTCTTTTCCTCTCCCAGGTCAATTGAACAAAatcccaaaaaagaaaaagaaagtaaaagcAGATTCCATAAGAAAGATGCAGGACTAGGTAGGAAGTTACTAGAAAGTTCATGGTTATTAGGTGGAAACAAGTTTAAGAAAGATACAAAAGTTTGTGCTGTGTGCTTAGAAAATTTTCATCAAGATGAAGAAGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTTCCTTGGCTTGAAGAACACCCTCATTGTCCTTATTGTAGAACCATGGTTGTGCCAAGGGATTAG 504 0.3571 MAGRLPGVGLSPRKRSENHHNRHEQYGTYRDSSYLRESLETPWTSMTTTLDESAFKAKQRLQKKLGYFFSSPRSIEQNPKKEKESKSRFHKKDAGLGRKLLESSWLLGGNKFKKDTKVCAVCLENFHQDEEVMNLSCSHKYHSACLLPWLEEHPHCPYCRTMVVPRD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04528 167 MobiDBLite consensus disorder prediction 1 30 - -
Tsu01g04528 167 MobiDBLite consensus disorder prediction 76 91 - -
Tsu01g04528 167 Pfam Ring finger domain 118 160 IPR001841 -
Tsu01g04528 167 CDD RING-H2_PA-TM-RING 118 160 - -
Tsu01g04528 167 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 29 161 - -
Tsu01g04528 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 166 IPR013083 -
Tsu01g04528 167 SMART ring_2 119 159 IPR001841 -
Tsu01g04528 167 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 29 161 - -
Tsu01g04528 167 SUPERFAMILY RING/U-box 118 165 - -
Tsu01g04528 167 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
Tsu01g04528 167 MobiDBLite consensus disorder prediction 13 30 - -
Tsu01g04528 167 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04528 Tsu-Chr1 52906943 52909002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04528 113 164 C3H Transcription Factor Family AT3G58720 42.308 1.65e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04528 - - gmx:100527548 224.172