Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04521 atgaatatgaattttcaTCATGGTGGAGTTAAGGAGGAGTTTATGGGAGGAAGTTCTTCATTTTGTGTAGTTGgtgatcctcaaccaatggaAGGACTTCATGAAAATGGTCCTCCACCATTCCTTACAAAAACATATGATATAGTTGATGATCCTTCAACAAATCATATAGTTTCATGGAGTAGAGGGAACAATAGCTTTGTTGTTTGGGATCCTCAAGCCTTTTCCATTTGTCTTCTCCCTAGATTCTTCAAGCACAACAATTTCTCTAGTTTTGTCAGACAACTTAACACATATGGATTTAAAAAGGTTGATCCAGATAGTTGGGAATTTGCTAATGAGATGTTTCTAAGAGGACAAAAAATCCTTTTAAAGAACATAATTAGAAGGAGAAAAACAGATCAATCTCAAGCAATGCAACAACAAACTCTAGACCCTTCATGTGTTGAGGTGAGAAGATTTGGATTAGACGGAATTGAAATCGATCGGTTAAGGCGCGACAGACAAGTTCTAATGGTTGAATTAGTGAAACTTAGACAACAGCAACAAAATACTAGAACTTACCTTGAAGCAATGGAAGGAAGGCTTAAAAGAACTgaacataaacaaaaacaaatgatgAATTTCTTGGTAAGAGCAATAGAAAATCCTAATTTCTTGCAACAATTGGTTGAGCAGAAGGAATGGAGAAAAGAGTTAGAAGAAGTTTTTTctaagaagaggagaagaaataTTGATCAAGGGCATAGTAATGTTGAAGTAGGAGATGTTGAGGAACATGCTAATCTCATGAACCAACTTGATATTAGAGATAAAGAGATTGATGTTGAAGTGTTTTGGCAAGATTTGTTTAAAGATGATATTGAAGATGAAGTAGATGTTGAAGATGTAGATGTATTGATTGAGCAACTTGGTTATCTTGCCTCTAGTCTTCCTAATTAA 942 0.3227 MNMNFHHGGVKEEFMGGSSSFCVVGDPQPMEGLHENGPPPFLTKTYDIVDDPSTNHIVSWSRGNNSFVVWDPQAFSICLLPRFFKHNNFSSFVRQLNTYGFKKVDPDSWEFANEMFLRGQKILLKNIIRRRKTDQSQAMQQQTLDPSCVEVRRFGLDGIEIDRLRRDRQVLMVELVKLRQQQQNTRTYLEAMEGRLKRTEHKQKQMMNFLVRAIENPNFLQQLVEQKEWRKELEEVFSKKRRRNIDQGHSNVEVGDVEEHANLMNQLDIRDKEIDVEVFWQDLFKDDIEDEVDVEDVDVLIEQLGYLASSLPN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04521 313 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 21 260 - -
Tsu01g04521 313 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu01g04521 313 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu01g04521 313 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu01g04521 313 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu01g04521 313 SUPERFAMILY "Winged helix" DNA-binding domain 36 130 IPR036390 -
Tsu01g04521 313 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 260 IPR027725 -
Tsu01g04521 313 Coils Coil 161 181 - -
Tsu01g04521 313 Gene3D - 33 131 IPR036388 -
Tsu01g04521 313 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu01g04521 313 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04521 Tsu-Chr1 52824533 52826247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04521 27 262 HSF AT3G22830 68.724 2.19e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu01g04521 HSF_DNA-bind 1.6e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04521 K09419 - gmx:100809515 417.542