Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04513 ATGCCAGTAAGGCAAATGAAAGAAAGCTCAGAGCAACACATTGTGGTCAAAACCAATTTGCAGAACCCTAAGAATCAACCAAAGGCTTCTCAAAATGGAAAAGCTTCATCACCACCAAATTCAGTAGAAAACAATAGCCAAATTTCACCTCAAGTAAGGaacaaaggaagaagaagaggaagaggtggACGAAAATCTGATCAAGCAGAAATTTTGATGAGACCAAGTTCAAGACCATGTACAGCAATAACTAGTAACATTGATGTTGGTTTTCCTTCTTCAAGCAAGTCTTTGAACTTTGCTCCTAGACCTGGATTTGGAACAGTTGGGACAAAATGTATTGTGAAGGCTAATCACTTTTTTGCAGAGTTACCAGACAAGGACTTAAACCAATATGATGTTACTATTACCCCTGAAGTGTCATCAAGAACAGTAAACAGGTCCATTATAGCTGAGCTTGTGAGGTTGTATAAAGAGTCTGACTTAGGGATGAGGCTTCCAGCTTATGATGGCAGAAAAAGTCTGTATACTGCAGGACAGCTACCCTTTTCATGGAAAGATTTTAAGATTAACCTTGTTGATGAAGAGGATGGAGTTAATTGCCCCAAaagGGTAAAAGAGTACAGGGTGGTGATCAAGTTTGTTGCTAGAGCAAACTTGCATCATTTGGGCCAGTTTCTAGCTGGTAAGCGTGCCGATGCACCACAGGAGGCACTTCAAATTCTTGATATTGTACTAAGAGAGCTATCAACTAAGAGGTATTGCCCCATTGGGAGGTCTTTCTTTTCACCTGATATAAGAAAACCACAGCGGCTTGGCGAGGGATTGGAATCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATCGATATGGCATCTGCTGCGTTCATCGAGCCTCTTCCAGTTGTAGAATTTGTTGGTCAGCTGCTAGGAAAAGACGTGCTGTCAAGGCCATTGTCGGATGCTGATCGAATCAAGATTAAGAAAGGCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTAAGAAGAAAATATCGTGTTTCAGGGTTAACTTCTCAACCAACAAGAGAacttgtGTTTCCTGTTGATGAGAATTCAACTATGAAGTCGGTAGTTGAATATTTTCAAGAGATGTATGGTTTCACTATTCAATATACTCACCTTCCTTGCCTTCAAGTAGGCAACCAAAAGAAGGCTAATTACTTACCTATGGAGGCGTGCAAAATTGTTGAAGGGCAACGTTATTCGAAAAGATTGAATGAGAAGCAAATTACTTCTCTATTGAAAGTTACTTGTCAGAGACCCCGTGATCGGGAAAATGACATTTTACAAACCGTTCAACATAATGCTTATGACCAAGATCCTTATGCAAAGGAATTTGGAATTAACATCAGCGAGAAGCTAGCTTCTGTCGAAGCTCGAATTCTTCCTGCTCCTTGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAACTGTTTACCCCATGTTGGGCAGTGGAATATGATGAATAAGAAAATGATTAATGGAATGGCTGTTAACCGGTGGGCATGCATAAATTTCTCACGGAGCGTGCAAGATAGTGTTGCTCGCACTTTTTGCAATGACCTTGCTCTAATGTGTCAAGTATCTGGCATGGAATTTAATTTGGAGCCTGTTATCCCTATCTACAATGCGAAGCCTGAGCAAGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCAACAAACAAAACTAAAGGAAAGGAATTGGAGCTTTTGCTAGTAATATTGCCAGACAATAATGGTTCTCTTTATGGTGATCTCAAGCGAATCTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTTACAAAGCATGTCTTCAAAATCACTAAACAGTATTTAGCTAACGTATCTCTGAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTTGATGCTGTAAGCTATAGAATACCATTGGTTAGCGACATACCAACCATAATTTTTGGAGCAGATGTTACTCATCCTGAAAATGGAGAAGACACTAGCCCTTCAATAGCAGCTGTAGTAGCGTCCCAAGACTGGCCTGAAGTAACAAAATATGCTGGTTTAGTATGTGCTCAAGCTCATAGACAAGAACTTATACAAGATTTATACAAAACTTGGCATGATCCTGTTCGTGGCACGGTTAGTGGTGGCATGATAAGAGATTTACTGATTTCCTATAGAAAAGCAACGGGACAAAAGCCGCTACGAATTATATTTTACAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTGGACGCAATCCGGAAGGCATGTGCATCCTTAGAACCAAACTATCAGCCTCCGGTAACTTTCATCATTGTACAAAAAAGACATCATACTCGGTTATTCCCAAACAACCATAGAGATAGGAGTAGTACAGATAAGAGTGGAAATATATTGCCTGGAACCGTTGTCGATACTAAAATTTGCCATCCAACGGAATTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGGCCGGCTCACTATCATGTTCTATGGGACGAAAACAATTTCACAGCAGATGGAATCCAATCTTTAACAAACAATCTTTGTTATACATATGCTAGGTGCACACGATCCGTATCCATTGTTCCTCCAGCATATTATGCACATTTAGCAGCCTTTCGAGCCCGTTTCTATATGGAACCAGAAATGCAACAAGAGAATGGTTCGTCAGGTGACGGGAATTCTAGTCATAATAGTTCCAAGGGAACAACAAGAGCAGCTGGAGAATGTGGTGTTAAGCCATTACCAGCTTTGAAAGATAATGTTAAGAGAGTGATGTTTTACTGTTAA 2901 0.3974 MPVRQMKESSEQHIVVKTNLQNPKNQPKASQNGKASSPPNSVENNSQISPQVRNKGRRRGRGGRKSDQAEILMRPSSRPCTAITSNIDVGFPSSSKSLNFAPRPGFGTVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFSWKDFKINLVDEEDGVNCPKRVKEYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRKPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKGLRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYSKRLNEKQITSLLKVTCQRPRDRENDILQTVQHNAYDQDPYAKEFGINISEKLASVEARILPAPWLKYHESGKEKNCLPHVGQWNMMNKKMINGMAVNRWACINFSRSVQDSVARTFCNDLALMCQVSGMEFNLEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSYRIPLVSDIPTIIFGADVTHPENGEDTSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISYRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFPNNHRDRSSTDKSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPEMQQENGSSGDGNSSHNSSKGTTRAAGECGVKPLPALKDNVKRVMFYC 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04513 966 Pfam PAZ domain 334 438 IPR003100 GO:0005515
Tsu01g04513 966 Pfam N-terminal domain of argonaute 112 246 IPR032474 -
Tsu01g04513 966 SMART Piwi_a_2 596 917 IPR003165 GO:0003676
Tsu01g04513 966 MobiDBLite consensus disorder prediction 921 942 - -
Tsu01g04513 966 SUPERFAMILY PAZ domain 302 462 IPR036085 GO:0005515
Tsu01g04513 966 Pfam Mid domain of argonaute 505 582 IPR032473 -
Tsu01g04513 966 MobiDBLite consensus disorder prediction 921 944 - -
Tsu01g04513 966 Pfam Argonaute linker 1 domain 256 305 IPR014811 -
Tsu01g04513 966 Gene3D - 486 659 - -
Tsu01g04513 966 CDD Piwi_ago-like 466 916 IPR045246 -
Tsu01g04513 966 MobiDBLite consensus disorder prediction 12 53 - -
Tsu01g04513 966 MobiDBLite consensus disorder prediction 1 77 - -
Tsu01g04513 966 CDD PAZ_argonaute_like 307 421 - -
Tsu01g04513 966 Pfam Piwi domain 597 916 IPR003165 GO:0003676
Tsu01g04513 966 ProSiteProfiles PAZ domain profile. 308 422 IPR003100 GO:0005515
Tsu01g04513 966 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 54 965 - -
Tsu01g04513 966 PANTHER PROTEIN ARGONAUTE 10 54 965 - -
Tsu01g04513 966 SUPERFAMILY Ribonuclease H-like 588 917 IPR012337 -
Tsu01g04513 966 Gene3D - 665 966 IPR036397 GO:0003676
Tsu01g04513 966 Pfam Argonaute linker 2 domain 448 494 IPR032472 -
Tsu01g04513 966 Gene3D paz domain 301 426 - -
Tsu01g04513 966 SMART DUF1785_2 255 307 IPR014811 -
Tsu01g04513 966 ProSiteProfiles Piwi domain profile. 596 917 IPR003165 GO:0003676
Tsu01g04513 966 SMART PAZ_2_a_3 312 444 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04513 Tsu-Chr1 52750389 52757370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04513 1 966 Eukaryotic Initiation Factors Gene Family AT5G43810 79.279 0.0 1651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04513 K11593 - gmx:100816999 1741.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00160 05 1185097 1187421 Tsu01g04513 01 52750389 52757370 PCT