Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04509 ATGGCTCCAGGTAGTCATACTCAGAATGTTCAACCACCTGCAGCTTCTGCCTCAGTTGGTGTTGCAAACGTTGCAAAAAATGGTCGTGGAATGAAGACTGACCCGGGATGGGAATATGGTGTTTTGATTGATGAAGCTACAAGAAAAGTGAGGTGTAAATTCTGTCAAAAAGAATTTACAGGCGGCGCTCATCGATTGAAGCTTCATTTGGCTGGAACCAGTAGAGATATTAGGTCTTGTGAGTCGGTTCCAGATGATGTCAAGAAAACCATGGAGGATATTATGAATCCCTTACGAAAAAAGATGCTGAAAAAGAAGTGTATTGATGTTGTTGAAGAGGTTGCTGCTAATTCCAATGAAAAGAGGAAAATTGTAGGGGAGATAGCACGCAATGACATGCTCGAAAGAGGTTTAACTACACTTACACTTATAGTTGAGGATTCTGATTCCATGGCCTCTAAAACTGAAAGCGAGAGTCCAACAGATACGCCACCATCACCgCCAAAGAATGTATACAAGGATCCGGATGATGGGCGGCAGCGGTTTTTGCTTGAACTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACTATTTGGCTCAGAACCGGTATTTTGAGGATGAAGCATTCATTGGGTACTTAAAGTATCTTCAATATTGGCAACGTCCTGAATACATTAAATTTATTATGTATCCTCACTGCCTCTATTTTCTCGAGCTTCTTCAGAATGCAAACTTTCGCAATGCAATGGCACATCCTACCAATAAGgaacTGGCGCATAGACAGCAGTTCTATTTCTGGAAGAACTATAGGAACAATCGgctaaaacacattttaccaAAACCACTTCCAGAACCTACTGCTGCACTTCCTGCTTCAACTCAACCCCAGCCACCTGTGCCTGCACTACCACCGCCGCCACCTGCTACAAATGTTGCTGCGACAACATCTTCTACTCAAGCTCCTTCTCCAATGCCATATGGTTCTGGCCTTGCAAAAAATGACACAAGGAATCCTACAGTTGATAGAAGGAAAAGAAAGGAAGAATTTTTCATGGGAGATCTTCAACAGTGGCTAGCGTTCAACATGAATGGTGATATAAAGTGGTTGAATGAAGTTAGATGGAAGGACTTTTGGGCCGTAGCTTGTCATTGTGTTTGGATGTGGCGAAACAAGGAACTTCATGATGAGAATTTTTCTTGGCCTGTGCGTCAAGTACAACATGTAATGCAACGTATGCATGATTATTATCATGCGTACTCTACTAACAGAATAATTATGCAGCAGCCGCGGGTGGAGCTTGCAAGTTGCAACACTTTTGTAGCTGCGCTCTGGGGGGAGAAAGTTGGTTTAGAGTATGTTAGAATTTAG 1377 0.4198 MAPGSHTQNVQPPAASASVGVANVAKNGRGMKTDPGWEYGVLIDEATRKVRCKFCQKEFTGGAHRLKLHLAGTSRDIRSCESVPDDVKKTMEDIMNPLRKKMLKKKCIDVVEEVAANSNEKRKIVGEIARNDMLERGLTTLTLIVEDSDSMASKTESESPTDTPPSPPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNRLKHILPKPLPEPTAALPASTQPQPPVPALPPPPPATNVAATTSSTQAPSPMPYGSGLAKNDTRNPTVDRRKRKEEFFMGDLQQWLAFNMNGDIKWLNEVRWKDFWAVACHCVWMWRNKELHDENFSWPVRQVQHVMQRMHDYYHAYSTNRIIMQQPRVELASCNTFVAALWGEKVGLEYVRI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04509 458 MobiDBLite consensus disorder prediction 149 174 - -
Tsu01g04509 458 MobiDBLite consensus disorder prediction 288 313 - -
Tsu01g04509 458 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 158 351 IPR008831 GO:0003712|GO:0006355|GO:0016592
Tsu01g04509 458 MobiDBLite consensus disorder prediction 288 343 - -
Tsu01g04509 458 ProSiteProfiles Zinc finger BED-type profile. 31 87 IPR003656 GO:0003677
Tsu01g04509 458 Pfam SOH1 180 272 IPR008831 GO:0003712|GO:0006355|GO:0016592
Tsu01g04509 458 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 168 269 IPR038089 -
Tsu01g04509 458 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 158 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04509 Tsu-Chr1 52693051 52699375 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Tsu01g04509 Med31 8.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04509 K15153 - gmx:100818057 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04509 01 52693051 52699375 Tsu01g04509 01 52693051 52699375 ECH