Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04507 atgaaagaaaaaaaaggattaTTGCTTTTGTTCTATTCTACCAACAATAACAAGTTCAGATTTTTAATGTTATTCATGGTGTTGCTGTTTTCTCCATTTGCATTTTCACTCAGTCAAGAAGGACAAGCATTAATGGCAATGAAGTCTTCTTTCAACAACATAGCTGACGTTCTGCTTGACTGGGATGATGTGCACAATGATGACTTCTGCTCATGGCGTGGTGTCTTATGTGATAATGTCAGTGTTGCTCTTACTGTGGTATCTCTGAATTTGTCAAGCTTGAATCTTGGTGGTGAGATATCACCAGCTGTTGGTGATTTAAGAAACTTGCAGTCAATCGACTTGCAAGGGAACAAACTAACTGGTCAAATCCCGGATGAAATTGGGAACTGTGGTGCACTTGTTCATCTgGATTTATCTGATAATCAGCTTTATGGTGATATACCTTACTCTATATCAAAGCTGAAGCAACTTGAGTTTTTGAATTTGAAAAACAATCAGTTGACTGGTCCTATTCCTTCAACTTTATCCCAAATTCCTAACCTTAAGACTCTTGATCTTGCTCGAAATAAGCTCATAGGAGAGATACCAAGGCTACTTTATTGGAATGAAGTATTGCAATACCTTGGTTTGCGAGGGAATATGTTGACAGGAATTTTGTCTCCCGATATTTGCCAGTTATCTGGCTTGTGGTACTTTGATGTCAGAGACAATAATTTGACTGGTACTATACCTGAAAGCATCGGCAACTGTACTAGTTTTGAAATCTTCGACATATCTTATAATCAAATTACTGGGGAGATTCCTTATAACATTGGTTTTCTTCAAGTGGCTACTTTGTCACTTCAAGGAAATAGATTAACGGGCAAGATACCAGAAGTGATTGGTTTGATGCAAGCTCTAGCAATTTTGGATTTGAGTGAGAATCAGTTAGTTGGACCAATTCCTCCAATACTAGGAAATCTATCTTTCACCGGCAAGCTGTACCTTCATGGAAACATGCTCACTGGTTCAATACCTCCGGAGCTTGGCAATATGTCTAAACTGAGCTACCTGCAATTGAATGATAATCAACTGGTGGGTCAAATTCCTAATGAGTTTGGCAAGCTTGTACATCTGTTTGAATTGAATCTTGCCAATAATCGTCTTGATGGATCTATTCCACATAACATAAGCTCATGCACGGCCTTAAATCAGTTTAATGTGCATGGCAATCAATTAAGCGGTTCTATTCCGTTGAGCTTTCGTAACCTTGAGAGTTTGACTTACTTGAATCTCTCTGCAAACAACTTCAAGGGGCATATACCGGTTGAGTTGGGTCATATCATTAATCTTGATACGCTGGACCTATCTAGCAATAATTTTTCAGGCCATGTTCCAGCTTCAGTTGGTTATTTAGAGCATCTTTTGACACTGAACTTGAGTCATAACCATCTTGACGGTCCCTTGTCTGCTGAATTTGGAAATCTCAGAAGCATACAGACAATTGATATGTCCTTCAACAACCTGTCGGGCAACATTCCTCCAGAAATCGGACAGCTTCAGAACCTTGCATCTCTGATTTTGAACAACAATGACCTGCACGGGAAGATTCCGGAACAGCTCACCAATTGTTTCAGTCTTTCTTCCTTGAATTTCTCTTATAATAACTTAACTGGAATAGTTCCTTCTACAAAGAACTTCACACGGTTCTCAGCTGACAGCTTCATTGGAAATCCCTTATTATGTGGAAATTGGATAGGATCTATATGTCGTCCTTATGTTCCAAAGTCAAGAGaGATTTTTTCTAAAGTTGCAGTTATATGTCTCACTCTTGGTATCATCGTGTTATTGGCTATGGTAACAATTGCTATCTATAGATCCATCCAATCAAAGCAGCTGATGAAAGGATCTAGTAAGTCTGTGCAAGtGCCTCCTAAACTTGTAATTCTTCATATGGATCTGGCATTACACACTTTGGATGATATAATGAGAAACACCGAGCATCTTAGTGAGAAATTTATCATAGGGTGCGGTGCCTCTAGTACTGTATACAAGTGTGTGTTGAAAAACTCCCGACCGATTGCCGTCAAGCGATTGTACAATCAGCAACCACACAATATAAGGGATTTTGAAACAGAACTTGAAACAATTGGCAGCATTAGACATAGAAATCTTGTCACCTTGCACGGCTATGCACTTACTCCTTATGGAAATCTCCTTTTCTATGAGTACATGGCAAATGGTTCTCTGTGGGATCTTCTACATGGTCCACTTAAGGTAAAACTCGACTGGGAAACACGGATGAGGATTGCTGTTGGAGCAGCTGAAGGGCTTGCATATCTTCACCATGATTGCAACCCTCGAATTGTTCACAGGGACATTAAGTCTTCGAATATTTTGCTGGACGAGAACTTTGAAGCTCACCTCTCTGATTTTGGCACTGCTAAATGCATCCCAGCTTCAAGAACTCACGCCTCAACTTATGTTCTAGGAACTATAGGCTATATTGATCCTGAATATGCACGGACATCTAGGCTGAATGAAAAATCTGATGTATATAGCTTTGGCATTGTGCTGCTAGAGCTACTTACTGGGAAGAAGGCTGTGGACAATGATTCCAATTTGCATCAATTGATCTTGTCCAAGGCGGATAACAACACTGTAATGGAGGCGGTGGATCCAGAGGTTTCTATTACCTGCATTGATTTGGCCCATGTCAAAAAAACCTTCCAACTTGCTTTGCTTTGCACCAGAAGGAATCCTTCCGAGAGGCCTACCATGCATGAAGTAGCTAGGGTGCTTATTTCACTACTTCCCGCACCTCCAAGTAAAGTTAAAGCAGCTGCTGCTGCTCCTACAAAGAGTTTTGACTATGCGCCTTTTGTGTTCGAGAAGGGACAGCAACACCGAAAATTGGATGGACTACAACCTCAGCAGGATAACAGTTCGCCTAATGCCCAATGGTTTGTTCGTTTCGGGGATGCCATATCCAAGAGCTCCTCCCACTGA 2991 0.4045 MKEKKGLLLLFYSTNNNKFRFLMLFMVLLFSPFAFSLSQEGQALMAMKSSFNNIADVLLDWDDVHNDDFCSWRGVLCDNVSVALTVVSLNLSSLNLGGEISPAVGDLRNLQSIDLQGNKLTGQIPDEIGNCGALVHLDLSDNQLYGDIPYSISKLKQLEFLNLKNNQLTGPIPSTLSQIPNLKTLDLARNKLIGEIPRLLYWNEVLQYLGLRGNMLTGILSPDICQLSGLWYFDVRDNNLTGTIPESIGNCTSFEIFDISYNQITGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENQLVGPIPPILGNLSFTGKLYLHGNMLTGSIPPELGNMSKLSYLQLNDNQLVGQIPNEFGKLVHLFELNLANNRLDGSIPHNISSCTALNQFNVHGNQLSGSIPLSFRNLESLTYLNLSANNFKGHIPVELGHIINLDTLDLSSNNFSGHVPASVGYLEHLLTLNLSHNHLDGPLSAEFGNLRSIQTIDMSFNNLSGNIPPEIGQLQNLASLILNNNDLHGKIPEQLTNCFSLSSLNFSYNNLTGIVPSTKNFTRFSADSFIGNPLLCGNWIGSICRPYVPKSREIFSKVAVICLTLGIIVLLAMVTIAIYRSIQSKQLMKGSSKSVQVPPKLVILHMDLALHTLDDIMRNTEHLSEKFIIGCGASSTVYKCVLKNSRPIAVKRLYNQQPHNIRDFETELETIGSIRHRNLVTLHGYALTPYGNLLFYEYMANGSLWDLLHGPLKVKLDWETRMRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCIPASRTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHQLILSKADNNTVMEAVDPEVSITCIDLAHVKKTFQLALLCTRRNPSERPTMHEVARVLISLLPAPPSKVKAAAAAPTKSFDYAPFVFEKGQQHRKLDGLQPQQDNSSPNAQWFVRFGDAISKSSSH 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04507 996 Gene3D Ribonuclease Inhibitor 277 362 IPR032675 -
Tsu01g04507 996 Gene3D Ribonuclease Inhibitor 363 460 IPR032675 -
Tsu01g04507 996 Gene3D Ribonuclease Inhibitor 461 586 IPR032675 -
Tsu01g04507 996 Gene3D Ribonuclease Inhibitor 37 203 IPR032675 -
Tsu01g04507 996 ProSiteProfiles Leucine-rich repeat profile. 181 203 IPR001611 GO:0005515
Tsu01g04507 996 Pfam Leucine Rich Repeat 109 131 IPR001611 GO:0005515
Tsu01g04507 996 ProSitePatterns Protein kinases ATP-binding region signature. 669 691 IPR017441 GO:0005524
Tsu01g04507 996 Gene3D Transferase(Phosphotransferase) domain 1 739 942 - -
Tsu01g04507 996 Gene3D Ribonuclease Inhibitor 204 276 IPR032675 -
Tsu01g04507 996 Gene3D Phosphorylase Kinase; domain 1 623 738 - -
Tsu01g04507 996 Pfam Leucine Rich repeats (2 copies) 156 197 IPR025875 -
Tsu01g04507 996 SUPERFAMILY L domain-like 38 337 - -
Tsu01g04507 996 Pfam Leucine rich repeat 444 503 IPR001611 GO:0005515
Tsu01g04507 996 Pfam Protein kinase domain 667 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04507 996 ProSiteProfiles Protein kinase domain profile. 663 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04507 996 SUPERFAMILY RNI-like 244 563 - -
Tsu01g04507 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Tsu01g04507 996 SMART LRR_typ_2 418 442 IPR003591 -
Tsu01g04507 996 SMART LRR_typ_2 370 394 IPR003591 -
Tsu01g04507 996 SMART LRR_typ_2 298 322 IPR003591 -
Tsu01g04507 996 SMART LRR_typ_2 179 203 IPR003591 -
Tsu01g04507 996 SMART LRR_typ_2 466 489 IPR003591 -
Tsu01g04507 996 SMART LRR_typ_2 346 369 IPR003591 -
Tsu01g04507 996 SMART LRR_typ_2 227 251 IPR003591 -
Tsu01g04507 996 SMART LRR_typ_2 107 131 IPR003591 -
Tsu01g04507 996 SMART LRR_typ_2 514 538 IPR003591 -
Tsu01g04507 996 SMART LRR_typ_2 155 178 IPR003591 -
Tsu01g04507 996 SMART serkin_6 663 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04507 996 SUPERFAMILY Protein kinase-like (PK-like) 645 928 IPR011009 -
Tsu01g04507 996 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Tsu01g04507 996 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 28 963 - -
Tsu01g04507 996 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 28 963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04507 Tsu-Chr1 52679199 52687236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04507 109 994 Receptor kinase-like Gene Family AT5G07180 75.874 0.0 1352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Tsu01g04507 Pkinase 5.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04507 K20718 - gmx:100811653 1652.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04507 01 52679199 52687236 Tsu01g04507 01 52679199 52687236 ECH