Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04502 ATGTCTGCTCAATCACACTCCATCCATAaacataacaacaaaaaaaccaaaaaaaacaacactCAATCACAAACTGAACCAGAAGATTCAATCACTGACATTAACAATAAGAAAAGCATTAACAATCTGAATACCCCCGATCCCGACAACAATGGGGTTTCGGGGaagacaaagaagaagaagaacaagaagaagcgTAAGGCTTCAGAGTTAGAGACAATGACGACAACCAATGACAATGAGGATGATAATGAGAATAGTTTAGAGCTGGTGGTTGAGTcgaataaagaaaagaaaagtaagaAGAAAAAAGCTAAGTCGGAAGAAAGTTTTGTGATGGAAAAGAAGGTGGAGGATCCTAATGCGGTATCTAAATTTAAGATATCTGAACCGTTGAGGGAAAAGTTGAAGGAAAAAGGAATTGAATCATTGTTTCCTATTCAGGCTATGACTTTTGATATCATTCTTCGTGGTTCTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACTCTAGCCTTTGTATTGCCCGTATTAGAATCTGTAACGAATGGTCCAGGAAAAGCATCAAGAAAGAATGGCGATGGGAGGGCTCCAAGTGTTCTTGTGCTTTTACCTACTAGGGAATTGGCATGTCAGGTGAATGCTGATTTTGAAGTTTATGGTGGCGCATTGGGATTAACTTCTTGTTGTTTATACGGAGGAGCTCCATATCAACCTCAAAAAATTAAGCTTGAGAGAGGCGTGGATATTGTTATTGGCACACCGGGCCGTATAAAGGATCATATAGAGCGGGGAAGTATTGACCTAAGCCAACTAAAGTTCCGTGTCCTCGATGAAGCAGATGAGATGCTAAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTTGGTAAGGTGAAAAATGTAGGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGATTGGGTTAAGGATATTGCTAAAAGATTTCTTAAGCCAGATAAGGAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACTAGCGTACGGCATATTATTCTTCCTTGTTCGGGTTCTGCTAGGTCCCAACTTATTCCAGATATTATTCGATGTTACAGCAGTGGAGGCCGAACAATTATATTCACTGAGACAAAGGAGTCGGCATCTCAGCTTGCAGAGTTGTTTCCTGGAGCAAGAGCTCTTCATGGCGACATACAGCAAGCACAACGTGAGGTTACTTTGTCTGGCTTCAGGTCTGGTAAATTCATGACATTAGTTGCCACAAACGTGGCAGCACGAGGTCTTGATATTAATGATGTTCAGCTAATTATTCAGTGTGAGCCTCCAAAGGATGTTGAAGCCTATATCCATCGTTCTGGACGCACAGGAAGAGCAGgTAACACTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAATATATCTAAAATAGAGAAAGAGTCAGGTGTTAAATTTGAACACGTATCTGCCCCTCAGGCTAATGATATTGCAAAAGCTGTTGGTCGAGAAGCTGCAGAAATGATTAACCAAGTGTCTGATAGTGTGATTCCCGCATTCAAGTCTGCGGCTGAGgagcttttaaaaaattctGGTTTATCAGAAGTTGATTTACTTGCAAAGGCTTTAGCCAAGGCTGTTGGTTATACTGAGATCAAGAAAAGATCTCTTCTCACTTCTATGGAGAACTACGTTACATTACTTCTCGAAAACGGGAGACCTATCTTTACCCCAACTTTTGCATACAAAATCTTGAGGAGATTTTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACTATCACTGCAGATGGAAGTGGTGTTGTTTTTGATGTACCAGCTGAGGATTTAGATGCATATCTTGCAGGTAAAGAAAATTCATCAGAAGTAAGTTTAGAGGTGCTAAAAGCTTTGCCGCGTCTGCAACAAAGAGATCAATCAAGAGGCGGTAGATTTGGTGACGGTGGTGGTCGCGGTGGAAGAAGTGGTGGTGGAAGGAATAGTAGATATTCAAGTGATAGGTTTTCGAACGGTGGTGGTAGAGGTCGTGGAAACTGGGGTGGGAAAAGATGGTGA 2100 0.3981 MSAQSHSIHKHNNKKTKKNNTQSQTEPEDSITDINNKKSINNLNTPDPDNNGVSGKTKKKKNKKKRKASELETMTTTNDNEDDNENSLELVVESNKEKKSKKKKAKSEESFVMEKKVEDPNAVSKFKISEPLREKLKEKGIESLFPIQAMTFDIILRGSDLVGRARTGQGKTLAFVLPVLESVTNGPGKASRKNGDGRAPSVLVLLPTRELACQVNADFEVYGGALGLTSCCLYGGAPYQPQKIKLERGVDIVIGTPGRIKDHIERGSIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVKNVGKVQTLLFSATLPDWVKDIAKRFLKPDKETADLVGNTKMKASTSVRHIILPCSGSARSQLIPDIIRCYSSGGRTIIFTETKESASQLAELFPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPKDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIEKESGVKFEHVSAPQANDIAKAVGREAAEMINQVSDSVIPAFKSAAEELLKNSGLSEVDLLAKALAKAVGYTEIKKRSLLTSMENYVTLLLENGRPIFTPTFAYKILRRFLPEEKVEAVKGLTITADGSGVVFDVPAEDLDAYLAGKENSSEVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGRSGGGRNSRYSSDRFSNGGGRGRGNWGGKRW 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04502 699 CDD GUCT_RH7_like 562 647 - -
Tsu01g04502 699 CDD SF2_C_DEAD 349 475 - -
Tsu01g04502 699 Pfam GUCT (NUC152) domain 555 650 IPR012562 GO:0003723|GO:0004386|GO:0005524
Tsu01g04502 699 SMART ultradead3 140 352 IPR014001 -
Tsu01g04502 699 Pfam Helicase conserved C-terminal domain 368 466 IPR001650 -
Tsu01g04502 699 Gene3D - 574 644 - -
Tsu01g04502 699 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 505 IPR001650 -
Tsu01g04502 699 MobiDBLite consensus disorder prediction 653 699 - -
Tsu01g04502 699 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 51 674 - -
Tsu01g04502 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 478 IPR027417 -
Tsu01g04502 699 CDD DEADc 132 329 - -
Tsu01g04502 699 SMART helicmild6 385 466 IPR001650 -
Tsu01g04502 699 Gene3D - 49 333 IPR027417 -
Tsu01g04502 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 302 IPR027417 -
Tsu01g04502 699 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Tsu01g04502 699 MobiDBLite consensus disorder prediction 18 52 - -
Tsu01g04502 699 MobiDBLite consensus disorder prediction 1 86 - -
Tsu01g04502 699 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 334 IPR014001 -
Tsu01g04502 699 Gene3D - 359 573 IPR027417 -
Tsu01g04502 699 SUPERFAMILY RNA-binding domain, RBD 559 642 IPR035979 GO:0003676
Tsu01g04502 699 Pfam DEAD/DEAH box helicase 145 322 IPR011545 GO:0003676|GO:0005524
Tsu01g04502 699 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 51 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04502 Tsu-Chr1 52635579 52639786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04502 105 472 Eukaryotic Initiation Factors Gene Family AT3G19760 29.679 2.59e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04502 K16911 - gmx:100820207 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04502 01 52635579 52639786 Tsu01g04502 01 52635579 52639786 ECH