Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04496 atgtTTCCTTTACAACGATGCAATGAACTGTCGATCCCGTTATCTAATAGTCTCAACCACCACCCACAACATCACAAAATCCCTCAAGATCTGATTCTTGATGATTGTGATTCTcttgtttttgatttttctcataaaaaaatggCTATTAGCCGTCCACCAAACATATTACTTTATACACCACCAGATCATCATAATACAAATCTCAATTCTATCATCAAAGATAACAATAAGAAGATGGTTCATAGAGAGATTGAGAAACAAAGAAGACAAGAAATGGCTACTCTTCATGCTTCCCTTAGATCCCTTCTCCCTCTTCGCTTCATCAAGGGAAAACGTTCTTTATCTGATCAAATGAATGAAGGAGTGAATTACATAAATCACATGAAGAAGAATATAAAAGAACTTAGTGACAAGAGAGATGAACTGAAAAAACTCTCCAATCTTTCCAACCTCAAAAGCCATGTATCTTGTAGTTTCAGTATTCACAAGAATAATGGAACTGTAGGAATTGAAATCAGTAGCTTTAGAGATCAAGAAGGGGTCCCACTTTCAAAATTGCTAGAACAATTGATGAGAGTAGGACTTGAAGTTGTTAGTTGCTTTTCAGTTGAAGTCAATGGAAGATTACTCCACAGTGTGCAGTGTGAgGTTATTAATTCTGTCAGTGACAGTGTAGATCTATGTGAGCTAAAAAGGAAATTTTCCAATATGAATCCATCATTTAGTTGTTCTGATTAA 741 0.3401 MFPLQRCNELSIPLSNSLNHHPQHHKIPQDLILDDCDSLVFDFSHKKMAISRPPNILLYTPPDHHNTNLNSIIKDNNKKMVHREIEKQRRQEMATLHASLRSLLPLRFIKGKRSLSDQMNEGVNYINHMKKNIKELSDKRDELKKLSNLSNLKSHVSCSFSIHKNNGTVGIEISSFRDQEGVPLSKLLEQLMRVGLEVVSCFSVEVNGRLLHSVQCEVINSVSDSVDLCELKRKFSNMNPSFSCSD 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04496 246 Pfam Helix-loop-helix DNA-binding domain 78 129 IPR011598 GO:0046983
Tsu01g04496 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 129 IPR011598 GO:0046983
Tsu01g04496 246 CDD bHLH_AtORG2_like 78 152 - -
Tsu01g04496 246 Gene3D - 70 157 IPR036638 GO:0046983
Tsu01g04496 246 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 244 IPR015660 GO:0003700|GO:0006357
Tsu01g04496 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 145 IPR036638 GO:0046983
Tsu01g04496 246 Coils Coil 126 149 - -
Tsu01g04496 246 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04496 Tsu-Chr1 52590051 52591245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04496 75 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 46.067 2.69e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g04496 HLH 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04496 - - gmx:100775836 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04496 01 52590051 52591245 Tsu01g04496 01 52590051 52591245 ECH
Tsu06g03225 06 42782045 42784585 Tsu01g04496 01 52590051 52591245 PCT