Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04495 ATGGCTGAAGAAAATCagcataaaatatttattacttCAGACAATGATGAAAAGAAGATTATTCGTAGGGAAGTTGAAAAACAAAGAAGGATGCAAATGTCTATTCTATGTTCATCACTCCGTTCTTCACTCCCTCTTGACCTCATCAAgGGAAAGCGTTCGGTATCAGATCACATAGGTGAGGCTGCAAATTATGTTCAatttttgaagcaaaaaattAATGAACTTGAAACAAAGAGGGATAGGCTCAAAGAAATGGCTAGTTCAAGTATGGTTGAGACTGGAAATGAATTATCAGCAAATCCTTCAAGTTTAGTGAAGTGTGTCAAGATTAATATCATTCAAGGTGGTGTAGAAATTGTAATATGTAGCGGTTTCGAGAATTGTAGTTCGCGTTTATCGgatttaatgaaaataatactTGAAGAAGGATGTGATGTTGTTCATTGTGTTACTAACCAAGTAAATGGGAAGATTTTTCATACTATTAAATCTGAGGTGAAGGACATGGCATACCTTAATCTTGCTCGGCTGCAAAACAAACTGGATCATGCAATCTTGTTATGA 567 0.3333 MAEENQHKIFITSDNDEKKIIRREVEKQRRMQMSILCSSLRSSLPLDLIKGKRSVSDHIGEAANYVQFLKQKINELETKRDRLKEMASSSMVETGNELSANPSSLVKCVKINIIQGGVEIVICSGFENCSSRLSDLMKIILEEGCDVVHCVTNQVNGKIFHTIKSEVKDMAYLNLARLQNKLDHAILL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04495 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Tsu01g04495 188 CDD bHLH_AtORG2_like 18 84 - -
Tsu01g04495 188 Coils Coil 59 93 - -
Tsu01g04495 188 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 187 IPR015660 GO:0003700|GO:0006357
Tsu01g04495 188 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 187 - -
Tsu01g04495 188 Gene3D - 10 95 IPR036638 GO:0046983
Tsu01g04495 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 88 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04495 Tsu-Chr1 52583831 52584811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04495 12 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 35.912 6.56e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04495 - - ccaj:109790384 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04495 01 52583831 52584811 Tsu01g04495 01 52583831 52584811 ECH