Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04493 ATGTCCTGGAAATGTTtatgttgttttctttctaATGAAGAAGAGCATAGCCAAAGAAGGAATGttgatgacaaaaaaaatgttgttagGGACTATCCATGGGACAGATACACCTTGAAGGAATTGCTTCGTGCAACAAACAATTTTCATCAAGATAACAAGATTGGAGAAGGTGGATTTGGAAGTGTATATTGGGGTCAAACAAGTAAAGGCATTGCTGTGAAGAGATTGAAGACAATGACTGCAAAAGCAGAGATGGAATTTGCAGTTGAAGTGGAAGTACTTGGAAGGGTTAGGCATAGGAATTTGTTAGGATTAAGGGGATTCTATGCAGGAGGAGAAGAAAGGTTAATTGTGTATGATTACATGCCTAATCATAGTTTACTCACTCATTTACATGGTCAACTTGCCTCTGATTGTTTACTAGATTGGTCTAGAAGAATGAGCATAATAATTGGTGCAGCTGAAGGTTTAGCGTATTTACACCATGAGGCAAATCCTCACATAATTCATAGAGACATAAAAGCAAGCAATGTTCTTCTAGACACAGAATTTCAAGCCAAGGTAGCTGATTTTGGTTTTGCAAAGTTAATACCAGCAGGTGTAAGTCATCTAACAACAAGAGTTAAAGGCACACTTGGTTATTTAGCACCAGAATATGCTATGTGGGGTAAAGTTTCTGAGAGTTGTGATGTTTATAGTTTTGGAATTTTACTTTTGGAAATTATTAGTGCAAAAAAACCAATTGAAAAACTACCTGGTGGAATAAAAAGAGACATTGTTCAATGGGTCACACCTTATGTACAAAAGGGTGTTTTTAAGCATATTGCTGATCCAAAATTAAAAGGGAATTTTGATTTAGAACAATTGAAATCAGTGATTATGATAGCTTTGAAATGCACTGATGGTAGTCCTGATAAAAGGCCTAGTATGGAAGAGGTTGTTGAATGGCTTAGGGATGGTGgttcaaagagaaaaaaagatgtTTCAAATTTGAGTAACAATAAGGGTGATGATGAAGGAAATGATGAAAACTATGAAGAGTTTGTAACAATGCAAACCAatcatttgaaaataataagTGATAATGATAGGCGCAAAatgagatga 1110 0.3342 MSWKCLCCFLSNEEEHSQRRNVDDKKNVVRDYPWDRYTLKELLRATNNFHQDNKIGEGGFGSVYWGQTSKGIAVKRLKTMTAKAEMEFAVEVEVLGRVRHRNLLGLRGFYAGGEERLIVYDYMPNHSLLTHLHGQLASDCLLDWSRRMSIIIGAAEGLAYLHHEANPHIIHRDIKASNVLLDTEFQAKVADFGFAKLIPAGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKLPGGIKRDIVQWVTPYVQKGVFKHIADPKLKGNFDLEQLKSVIMIALKCTDGSPDKRPSMEEVVEWLRDGGSKRKKDVSNLSNNKGDDEGNDENYEEFVTMQTNHLKIISDNDRRKMR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04493 369 MobiDBLite consensus disorder prediction 323 340 - -
Tsu01g04493 369 MobiDBLite consensus disorder prediction 323 345 - -
Tsu01g04493 369 PANTHER OS01G0253100 PROTEIN 4 343 IPR045271 GO:0004714|GO:0006468
Tsu01g04493 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Tsu01g04493 369 SMART serkin_6 49 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04493 369 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Tsu01g04493 369 SUPERFAMILY Protein kinase-like (PK-like) 33 321 IPR011009 -
Tsu01g04493 369 ProSiteProfiles Protein kinase domain profile. 49 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04493 369 Pfam Protein kinase domain 49 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04493 369 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 343 - -
Tsu01g04493 369 Gene3D Phosphorylase Kinase; domain 1 10 122 - -
Tsu01g04493 369 ProSitePatterns Protein kinases ATP-binding region signature. 55 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04493 Tsu-Chr1 52568768 52571221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04493 36 331 Receptor kinase-like Gene Family AT1G60800 45.183 1.04e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Tsu01g04493 Pkinase 5.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04493 - - gmx:100817283 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04493 01 52568768 52571221 Tsu01g04493 01 52568768 52571221 ECH