Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04487 ATGCTAAGAGTCAAGCATGAATCTCTAGCTCGGACTCAAAGgatttttttggGAGAAGAACTCAATGCACTTGGCATAAAAGATTTGCAGAGTATAGAGAAACAATTGGAGAGAACGCTTGCACAAGCTCGAAAGCACCAAATGGAAAAGATGATGGCAAAAGTTGATGAATTACGTGTGGAGGTGGACAAGGTGGAGGAGGtcaacaaacaattaaaatccCAGAGAAGAGGTATAAGCACCTATATTTGTGACAATACCAATGATTCGACCATCTCAAGTAATAACGACATCATCACCAATTTGCTTGATCCACAAGCCAATCAGTTTGATTATGGGACAACAAGTCGATTTGGGCACCAACAAGTTGCATCAAAAGGGCAAGCAACGAATACGAGCATTGACATTGATAGGGGACAAAGCAGTCACAACAAGAACAATGGATGGATgcatatttga 459 0.3834 MLRVKHESLARTQRIFLGEELNALGIKDLQSIEKQLERTLAQARKHQMEKMMAKVDELRVEVDKVEEVNKQLKSQRRGISTYICDNTNDSTISSNNDIITNLLDPQANQFDYGTTSRFGHQQVASKGQATNTSIDIDRGQSSHNKNNGWMHI 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04487 152 Pfam K-box region 2 75 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu01g04487 152 PANTHER MADS BOX PROTEIN 1 138 - -
Tsu01g04487 152 Coils Coil 26 75 - -
Tsu01g04487 152 MobiDBLite consensus disorder prediction 121 152 - -
Tsu01g04487 152 ProSiteProfiles K-box domain profile. 1 82 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu01g04487 152 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04487 Tsu-Chr1 52519811 52522405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04487 2 73 MADS-box Gene Family AT2G45650 43.056 7.86e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04487 K09264 - gmx:100793681 123.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04487 01 52519811 52522405 Tsu01g04487 01 52519811 52522405 ECH