Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04484 ATGGGTAAGGATAATTGGTATTGGAGTGGAAGAAGAAGATCCTCCACCAACAACACTAAACCTCAAACAGATATCCCTTCTGGTTGCATGTGTGCTGTTTTTCAAGCCTTTGATTTTCATCCCTTTCATTTTTCCATTAACCAACAACATCAAAACACTCTCAACTCTTCTTCTCCCATACAACAAACTCTCCCCAAAGGAGCTCAAGCACCAAGGAATAGCTTCGAATCAGAAGATGCTACATTCTCATCCTTCTCCAAAGAAGATAATTTCAAAATCCCAAAGAACATAAGAATCAAAACAGGTTCGGACAAAAGTTTCAATGATCTTTCCTCTCCAGGAACCAAAACACCAACTTTGGTTGCAAGATTAATGGGTCTTGAACTTCTTCCTGATGCAAATtcaccatcttcatcttcttcttcatcactcTCCACTCCAAACAAACAAGGACATTACCACAATAGATCAAAGCaagacaaaatcaaaataatgaaaCACAGACACAGCACAGACAGTGTCATCATGCGTTCATCCTTGCCTGAAAATCCAAGATTGTCCTCAGAAAAAACATCATATGTTGAACATAGACTATCTCTTCAAATCAACAAAGAAAACAGGAATCTTGGTGAAGATTTAGAGACTCCTCGTTCTTCATTTtcaaaaaggaaattttttgatgataacaaCAATTGTAGAAGTCCAAGTCATTATGCAAGACAAATTGTTAAACAGGTGAAAGAAAGTGTGAGTAGAAAAGTTGGTATTGACATAACCAACACAGTGAAAAACAGAGAACAAGCTGTTAAAGAAGAATTTGTTGGTCAAATCAGATTCAAGAAAGCTCTCAAACCATTAGAAGAATCAAACCAAGTAAACAAAAACACATCTCATTCTCCAAGACTCAGCAGATTCAATGATACAAACCACAAACATTCACCAAAAAAAgaccaaaaccaaaacacaCTCCAAGTACTAAAACAATCATCACCACCACCTGTGGTCAACATTGAAGCACAGGTTTCAAGAGTTTCAACAAAGCCAAAACTTCAAGCAATGTCAGAGGAGGACAAAAAAACTTTCCCAAAATGCAAGAAAACAGCACCTGGGAATTTGAGTCCACGGATCAACAATAAGCCTCCACAGTCATCATCAATCAGAAACAAGCAAGAAGAATCATTCATTCTCAGACCATCATCATCAACCGCTAAAGCTAATGATATCAAAACCAAAAGCAAGAGAACTCATCCACTTTCAAACAACTCTGTCCCAAATCTTCTCCCTCTCAAAGCACACCCTTCTCCTCTAGCTACAAAAATCCCCCAAAAACAGGTTAATGATGATGTCCAGGAAGCCAAAAACATGTCACAGTTATTTAGTTGTTCGCGCCACAAGTACACACTCGCCGCCCGAGGAACCACCATCGCAGCCACCGGAGCCGAAGACGAAGGATCGTCAGAATACCAATACATCACCACCATTCTTAGCCGTACCGGAATACACAGAGCAACAATAACAAGCCTTCAACATTTTCAATGGTTCTCTTCAACACATCCATTAGACCCATCAATTTTTCACCGTCTTGAACTCTACCCAACAACCAATTCCTTAGTTTCAAATCCCAACAACCATAAAGATATAAACTTTACACAGAAAAATCAAGTGGGTCCACGTTGTAACCGTAGATTATTGTTTGATTTAGTCGATGAAGTGTTGTCGGAAATTCTCATTAAGCCAAAATGTTACCGTGGGTTATTGTTGGAGACAGTTTGGAAAAAAGTTCGGAGTTTCCCACGTGCGAAATGTGAAGTTTTAGAAGACATTGATGGGTTGATagagatgaagatggtgatggaTGAAGttaaggaagaagaagaagaggaaaagTTGGTAGCAGAAATTGAAGGGAAAGTATTGGAGATGTTAGTGAATGAAACGTTAACCGTTATGGTGGGTCCGTACAAAAAGAACGGCGTCGTTTTGTGA 1986 0.3656 MGKDNWYWSGRRRSSTNNTKPQTDIPSGCMCAVFQAFDFHPFHFSINQQHQNTLNSSSPIQQTLPKGAQAPRNSFESEDATFSSFSKEDNFKIPKNIRIKTGSDKSFNDLSSPGTKTPTLVARLMGLELLPDANSPSSSSSSSLSTPNKQGHYHNRSKQDKIKIMKHRHSTDSVIMRSSLPENPRLSSEKTSYVEHRLSLQINKENRNLGEDLETPRSSFSKRKFFDDNNNCRSPSHYARQIVKQVKESVSRKVGIDITNTVKNREQAVKEEFVGQIRFKKALKPLEESNQVNKNTSHSPRLSRFNDTNHKHSPKKDQNQNTLQVLKQSSPPPVVNIEAQVSRVSTKPKLQAMSEEDKKTFPKCKKTAPGNLSPRINNKPPQSSSIRNKQEESFILRPSSSTAKANDIKTKSKRTHPLSNNSVPNLLPLKAHPSPLATKIPQKQVNDDVQEAKNMSQLFSCSRHKYTLAARGTTIAATGAEDEGSSEYQYITTILSRTGIHRATITSLQHFQWFSSTHPLDPSIFHRLELYPTTNSLVSNPNNHKDINFTQKNQVGPRCNRRLLFDLVDEVLSEILIKPKCYRGLLLETVWKKVRSFPRAKCEVLEDIDGLIEMKMVMDEVKEEEEEEKLVAEIEGKVLEMLVNETLTVMVGPYKKNGVVL 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04484 661 MobiDBLite consensus disorder prediction 350 364 - -
Tsu01g04484 661 Pfam Domain of unknown function (DUF4378) 487 645 IPR025486 -
Tsu01g04484 661 MobiDBLite consensus disorder prediction 131 164 - -
Tsu01g04484 661 MobiDBLite consensus disorder prediction 288 303 - -
Tsu01g04484 661 MobiDBLite consensus disorder prediction 318 349 - -
Tsu01g04484 661 MobiDBLite consensus disorder prediction 371 406 - -
Tsu01g04484 661 PANTHER DUF4378 DOMAIN PROTEIN 1 655 - -
Tsu01g04484 661 MobiDBLite consensus disorder prediction 288 427 - -
Tsu01g04484 661 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 655 - -
Tsu01g04484 661 MobiDBLite consensus disorder prediction 1 22 - -
Tsu01g04484 661 MobiDBLite consensus disorder prediction 132 152 - -
Tsu01g04484 661 Pfam DUF761-associated sequence motif 109 135 IPR032795 -
Tsu01g04484 661 MobiDBLite consensus disorder prediction 53 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04484 Tsu-Chr1 52497846 52500658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04484 112 660 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 32.524 4.95e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04484 - - mtr:MTR_1g101910 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04484 01 52497846 52500658 Tsu01g04484 01 52497846 52500658 ECH
Tsu06g03195 06 42393291 42396834 Tsu01g04484 01 52497846 52500658 PCT