Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04478 ATGGCTGTTGCCGAGAGCGGCAGCAGCATTGAACGCTCAACTTCATTCAACTGTTACAAAGTAGCAAGTTTGACAGAAACCATATTGAACGCAAAGCAAACTTCTAATTTGAAAGATCGATACATTCTAGGAGAGCAGTTGGGTTGGGGGCAGTTTGGTGTCATTAGAACATGCTCCGACAAAACAACCGGAGAGGTTTTGGCATGCAAATCAATTGCTAAAGATAGGCTGGTTACTTCAGATGATATGCAAAGTATTAAACTTGAGATTGAGATCATGGCGAAGTTATCCGGACATCCTAATGTTGTAGATCTCAAGGCAGTTTATGAAGAGGAAGATTTTGTTCATTTGGTGATGGAGCTTTGTGCCGGAGGAGAGCTGTTTCACCTGTTAGAGAAGCATGGAAGGTTTTCTGAATCCGAAGGAAGGGTTCTCTTTAGGCATCTCATGCAGATGGTTTTGTATTGTCACGAAAACGGGGTTGTTCATCGTGATTTGAAGCCTGAAAACATTCTCTTAGCAACTAAGTCGTTTTCGTCTCCAATTAAATTGGCCGACTTTGGTCTTGCAACCTACATTAAGCCTGGACAGAGTTTGCATGGTTTAGTTGGGAGTCCATTTTATATAGCTCCAGAGGTATTGGCAGGTTCATATAACCAGGCTGCCGATATTTGGAGTGCCGGGGTTATTCTTTACATTCTACTTAGCGGGATGCCACCATTTTGGGGAAAGACAAAGTCTCGAATATTTGAAGCCGTTAAGGCTGCTGATTTGAGATTTCCATCTGAACCTTGGGATCGCATCTCTAAATCTGCTAAGGATTTAATTAGGCGAATGCTCTGCAGACAAACTTCTCAAAGGCTCACTGCCCAAGAGGTTTTAGACCATTGCTGGATGGAAAGCGATCCAACAAATCTGGAACAACTAAGTGAACATAAAATCGAAAGTTGTGGAGAGTGGCATGTTGACGGCGGCTCCTTCTCTGCATCATTTATGTCGAGGAATGATGACATCAGCTTTGGCGCTGGATCACCTACATGTGACGCTCAGTCACCTACATTCACATGCAAATCATCGTTTTCTTCCATTTTCGTGGAACCAGTTACACCTTTTCCTGCGCCTAGCGGGTTTTCATTTCGGAGCACAGGTGATTCCATTGGTTTGGAGTTTTCTTCACCTGTTTCCTCGATGCCGAGCTTTGCATTTCTCAGTCCCAGTCCTGTTGTTGAGCAAAATAGTCTTATATTTGAGTTCTCGTCTAACACGTCAGAAGTAAATGCAATTGCTGGAGATTCTCCACTTTCCCTTGGAACTGACCTTAAAGAAAGGGATCACAAGCCTGTAGAGACTAAAAGGGCATGTGTAACAAATTGTTACAGGACATTGGGATTCCACAGCAAGAGAAACCGGACAATTGGACTTGGTGAGTGTGAGCAACTTGATTTTGTTGTGACCGAATCAGTCATTCGTTGGTTATCATGCACACAACTTCCTACATCACCAAAATCATCTCTTGTCTGTTGA 1524 0.4324 MAVAESGSSIERSTSFNCYKVASLTETILNAKQTSNLKDRYILGEQLGWGQFGVIRTCSDKTTGEVLACKSIAKDRLVTSDDMQSIKLEIEIMAKLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHGRFSESEGRVLFRHLMQMVLYCHENGVVHRDLKPENILLATKSFSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGSYNQAADIWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWDRISKSAKDLIRRMLCRQTSQRLTAQEVLDHCWMESDPTNLEQLSEHKIESCGEWHVDGGSFSASFMSRNDDISFGAGSPTCDAQSPTFTCKSSFSSIFVEPVTPFPAPSGFSFRSTGDSIGLEFSSPVSSMPSFAFLSPSPVVEQNSLIFEFSSNTSEVNAIAGDSPLSLGTDLKERDHKPVETKRACVTNCYRTLGFHSKRNRTIGLGECEQLDFVVTESVIRWLSCTQLPTSPKSSLVC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04478 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Tsu01g04478 507 PANTHER SERINE/THREONINE-PROTEIN KINASE 11 503 - -
Tsu01g04478 507 CDD STKc_CAMK 40 298 - -
Tsu01g04478 507 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04478 507 SUPERFAMILY Protein kinase-like (PK-like) 38 372 IPR011009 -
Tsu01g04478 507 Gene3D Transferase(Phosphotransferase) domain 1 128 322 - -
Tsu01g04478 507 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04478 507 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Tsu01g04478 507 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 34-LIKE 11 503 - -
Tsu01g04478 507 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Tsu01g04478 507 Pfam Protein kinase domain 43 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04478 Tsu-Chr1 52442479 52446658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04478 24 304 EF-hand Containing Proteins AT3G57530 48.043 1.38e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu01g04478 Pkinase 9.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04478 - - gmx:100776088 795.423