Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04476 ATGTTTACTATGAATCATATATCGGAGCCACATGTTCCATGTTCATCTTCAGAGAGGTTTCTTGCTGAGACTATGCCAAAGAAACCTGCAGGGAGGAAGAAGTTCAGGGAAACTCGCCACCCTGTATACCGTGGTGTAAGAAAGAGAGATTCTGGCAAGTGGGTTTGTGAAGTAAGAGAACCTAACAAGAAAACCAGAATTTGGCTTGGAACATTTCCTACTCCCGATATGGCAGCGCGTGCGCACGACGTTGCTGCGATTGCTCTTAGAGGAAATTCTGCTTGTCTTAACTTTGCTGACTCTGCTTGGAGTTTACCGGTTCCTGCTACGGCGGATGCAAGGGATATTCAAAAAGCGGCGGCTGAGGCAGCGGAGATGTTCCGGCCGGAGACTGAGTTTGAGAATAGTGAGGAGAGGAAGGGTAATGAGACTTCTTCGTCCACGACAGTGGCTGTGGAGATGGAGGAGACAGCGATGGAGCAtcgagatgaagaagaagacacGGTGCCGGAATATTTGAGAAACATGGTACTTATGTCACCGGCACATTATTGGGGGAGTGAATGTGAATATGATATTGCTGACGTGGAATTTGGTGGTGATACTGAAGTTTCATTGTGgagtttttcaatttaa 636 0.4481 MFTMNHISEPHVPCSSSERFLAETMPKKPAGRKKFRETRHPVYRGVRKRDSGKWVCEVREPNKKTRIWLGTFPTPDMAARAHDVAAIALRGNSACLNFADSAWSLPVPATADARDIQKAAAEAAEMFRPETEFENSEERKGNETSSSTTVAVEMEETAMEHRDEEEDTVPEYLRNMVLMSPAHYWGSECEYDIADVEFGGDTEVSLWSFSI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04476 211 MobiDBLite consensus disorder prediction 129 149 - -
Tsu01g04476 211 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Tsu01g04476 211 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Tsu01g04476 211 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Tsu01g04476 211 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Tsu01g04476 211 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Tsu01g04476 211 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 12 211 - -
Tsu01g04476 211 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Tsu01g04476 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 211 IPR045277 GO:0003700
Tsu01g04476 211 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Tsu01g04476 211 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04476 Tsu-Chr1 52428738 52429738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04476 21 209 AP2-EREBP Transcription Factor Family AT4G25470 55.556 3.22e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g04476 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04476 - K09286 aprc:113872706 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04476 01 52428738 52429738 Tsu05g00308 05 2294821 2295480 ECH
Tsu01g04476 01 52428738 52429738 Tsu01g04476 01 52428738 52429738 ECH
Tsu06g03016 06 39697861 39698505 Tsu01g04476 01 52428738 52429738 PCT