Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04475 ATGGatggcaacaacaacaacaatgttTCTGCAGtaccatcaccaccaccacctatACAAATCCCTAATGTAGTCACTTCTTCATCTACATCAGCACCAACAACTCCTTCATCTCCGGCAACAGGAGTCCTTGGTGGAAGATACCGAGGAACACGTTGCCGGAGTGGAAAATGGGTATCTGAAATACGTGAACCACGTAAAACAAAACGCATTTGGTTAGGAACATACCCTACAGCTGAAATGGCTGCAGCTGCTTATGATGTTGCTGCTCTTGCTTTAAAAGGACCTGAAACAACTCTTAACTTTCCTGATTTAATTCCTTCTTACCCTATTCCTGCTTCATTATCTTCAACTGATATTCGTGCTGCTGCCGAAGCTGCTGCACAAACCAGAATCATCAGAGTGAATCCTCCTCAACAACaagaagaacaacaaaaaccttcatcttcttgttttgaaggatcttcttcttcttcagcagTAGCTAGTGGAGTAGTACTGCAAGAATATATTGATGAAGATGAGTTATTGAATATGCCAAATTTGTTAGATGAAATGGCTAGAGGAATGCAGGTTAGTCCACCAAGGATGAGTTCATTTTCTAATTATTCTTCCGATGATTCGCCTCGCAATTCTGATCATGGAGGAGATAATCTTTGGAGTTACAAGTTTTGA 675 0.3511 MDGNNNNNVSAVPSPPPPIQIPNVVTSSSTSAPTTPSSPATGVLGGRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPETTLNFPDLIPSYPIPASLSSTDIRAAAEAAAQTRIIRVNPPQQQEEQQKPSSSCFEGSSSSSAVASGVVLQEYIDEDELLNMPNLLDEMARGMQVSPPRMSSFSNYSSDDSPRNSDHGGDNLWSYKF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04475 224 MobiDBLite consensus disorder prediction 23 41 - -
Tsu01g04475 224 ProSiteProfiles AP2/ERF domain profile. 47 103 IPR001471 GO:0003700|GO:0006355
Tsu01g04475 224 SMART rav1_2 47 109 IPR001471 GO:0003700|GO:0006355
Tsu01g04475 224 MobiDBLite consensus disorder prediction 1 48 - -
Tsu01g04475 224 Pfam AP2 domain 52 95 IPR001471 GO:0003700|GO:0006355
Tsu01g04475 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 44 222 - -
Tsu01g04475 224 SUPERFAMILY DNA-binding domain 48 104 IPR016177 GO:0003677
Tsu01g04475 224 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Tsu01g04475 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 44 222 - -
Tsu01g04475 224 MobiDBLite consensus disorder prediction 188 224 - -
Tsu01g04475 224 MobiDBLite consensus disorder prediction 194 209 - -
Tsu01g04475 224 MobiDBLite consensus disorder prediction 136 156 - -
Tsu01g04475 224 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04475 Tsu-Chr1 52416218 52417195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04475 40 223 AP2-EREBP Transcription Factor Family AT5G52020 51.531 1.29e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g04475 AP2 2.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04475 - - mtr:MTR_1g101550 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04475 01 52416218 52417195 Tsu06g03016 06 39697861 39698505 ECH
Tsu01g04475 01 52416218 52417195 Tsu01g04475 01 52416218 52417195 ECH