Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04474 ATGGATTCTACCATCACCAAATCAACCTTCCCAATTTTCACCACCAACCCATTTTTCCTCTCCAAAATATCTCTCAGACCCTTAAAAGTTTCCGTCAAACCTCCACCTCCAGACTTCAATTACAAGCTAGAGGTTTCCACAGAATCAAGAGCTGTTATTGCTGAATCTTACCCTGAGTTGCTTGATTTAGCTGATAATGGTAGCTTGGTTTTGGTTCAGAAGAAGAGGTTTGGTCCTGTTCCTTCTTGGAGGACTGAATTTGTTGAACCTGACTATATTTGGTTGATTGGAACAACTCATGTTTCCAATGAATCAGCTTTAGAAGTTGAGCGTGTTGTTAAGGCTGTGAAGCCAGATAATGTGGTTGTTGAGCTATGCAGAAGCAGAGCTGGGATCATGTATGCTGATGATGATCAGCTTGACAAACAGTTAAGATCTACTATGTTTTCCTTGAGTGGGACTGGGTTTTTTGGAGCTATTGGCCGTAGCATAAACCTAGGTGGTCAAACTGCTTTAGCATTGAGATTACTTCTGGCTGCTTTTTCATCAAAGATCTCTTCAGATACTAACCGCCCTTTCGGTGATGAGTTCCGTGCTGCTCGAAAAGTGTCAGAGGAAATTGGTGCACAAATAGTTTTGGGAGATAGGCCAATTGAAATAACACTTCAGAGAGCATGGAAGGCTTTGAATTGGACTCAGAAGTTGAGTTTATTGAAAATAGTTATCGGTGGAATAACATCTTCATCAGACATTTCTACAAATAAGCTCGAGTTGCAGAAAGCAAGTACAGATGATGGTACACTTCAGCTTTATGAGCAACTCAGTTTTTCATATCCATCTCTATTGCCACCTCTTATACATGAACGAGATACTTATCTTGCATGGTCTCTAAAGAGGAGCAAGGCTGTAAATAACTGTAAAAGGGTGGTAGGTGTAATTGGAAAAGGCCATATGAATGGTGTAATATATGCACTGTTAGCTGATACAGGGAATTTGAGGTTTCGAGACCTTGCAGGGAAAAATTCATCTGATGGAGGTTCTGGTGGCTGGCTTGATGACCTAGTCAAGAGTTTAGGTTCCTTCAACCGAACTCTCTTCCAAGGGAAAATGAAGGCTATTTTCTGTGGAAATTTTGAATATGATTGCCGGGAGTCTGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGGCTGGATTTGCTTTTATCTATATGGAAGATGAGAGAGATGCTGAGGCTGCCATTCGCGCTCTCGATCGGATAGAATTTGGTCGGAAGGGGCGCAGACTTCGTGTAGAATGGACAAAGCAAGAACGTGGCATCCGAAGGCCTGCTGAGCGTCCAAAAAGATCTTCAGCTAATGTAAGACCATCAAAGAccttatttgtaattaattttgatacataCCATACCAGAACAAGGGACTTGGAGAGGCATTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCATTTGTTCAGTATGATTCAGAAGATGATGCTTCCAAAGCACTGGAAGCTACAAATAATAGCAAATTGTTGGATCGGGTTATTTCAGTTGAATTTTCTTCTAAAGATGATGACGTTAGGAGAAATGGACATAGCCCGGAGAGGGGCCGTGATCGTCAACGTGACAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCATGGGCCTAGTCCATATAAGAGAGAGAGGAGCAGCCCTGACTATGGACGTGGCAACAGCCGTAGTAGAAGCCCTCCCTATAAGAGGGAGAGGAGTAGCCCTGCTTATGGGCGTCGAAGCATTAGTCCTTACAGAAGAGAGAGGGATGGTTCTGAGCCTGTTCGTGGCACCAGCCGCAGTCCTTATCACAAAGAGCGGGGGAGAACTGGCCGGTCTCCCTCTCAGAGTCCCGAAGAAGGAGAGAGGATAGACCTTCGAAATGATCATGGATCTGACCATAGTCCTTATGATACTGTGAAGGATAGCCCTGAAAATGGCCATCACCAGAGGCATAGTCCTGATGCAACAGGGAACCCCAGCCCATACAATGATTCTAGAAGAAGCCCTAGTCCTGATGCAAAAGGGAACCCCAGTCCATACAATGATTATGGAGGGAGCCCGAGCCCAAATACTGTGCCTGAACCCAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGCATGAGCAATATCGCAGCCAGAGCCAGTCACCCCCTGCAGAAGAATGA 2286 0.4449 MDSTITKSTFPIFTTNPFFLSKISLRPLKVSVKPPPPDFNYKLEVSTESRAVIAESYPELLDLADNGSLVLVQKKRFGPVPSWRTEFVEPDYIWLIGTTHVSNESALEVERVVKAVKPDNVVVELCRSRAGIMYADDDQLDKQLRSTMFSLSGTGFFGAIGRSINLGGQTALALRLLLAAFSSKISSDTNRPFGDEFRAARKVSEEIGAQIVLGDRPIEITLQRAWKALNWTQKLSLLKIVIGGITSSSDISTNKLELQKASTDDGTLQLYEQLSFSYPSLLPPLIHERDTYLAWSLKRSKAVNNCKRVVGVIGKGHMNGVIYALLADTGNLRFRDLAGKNSSDGGSGGWLDDLVKSLGSFNRTLFQGKMKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAAIRALDRIEFGRKGRRLRVEWTKQERGIRRPAERPKRSSANVRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYDSEDDASKALEATNNSKLLDRVISVEFSSKDDDVRRNGHSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGHGPSPYKRERSSPDYGRGNSRSRSPPYKRERSSPAYGRRSISPYRRERDGSEPVRGTSRSPYHKERGRTGRSPSQSPEEGERIDLRNDHGSDHSPYDTVKDSPENGHHQRHSPDATGNPSPYNDSRRSPSPDAKGNPSPYNDYGGSPSPNTVPEPRDSPNYGGPESPMHEQYRSQSQSPPAEE 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04474 761 CDD TraB_PrgY-like 93 325 IPR046345 -
Tsu01g04474 761 MobiDBLite consensus disorder prediction 601 689 - -
Tsu01g04474 761 CDD RRM1_AtRSp31_like 371 442 - -
Tsu01g04474 761 SUPERFAMILY RNA-binding domain, RBD 372 537 IPR035979 GO:0003676
Tsu01g04474 761 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 371 443 IPR000504 GO:0003723
Tsu01g04474 761 MobiDBLite consensus disorder prediction 690 726 - -
Tsu01g04474 761 MobiDBLite consensus disorder prediction 536 761 - -
Tsu01g04474 761 Pfam TraB/PrgY/gumN family 83 321 IPR002816 -
Tsu01g04474 761 MobiDBLite consensus disorder prediction 747 761 - -
Tsu01g04474 761 MobiDBLite consensus disorder prediction 536 594 - -
Tsu01g04474 761 PANTHER PHEROMONE SHUTDOWN PROTEIN 29 357 IPR046345 -
Tsu01g04474 761 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 529 IPR000504 GO:0003723
Tsu01g04474 761 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 431 IPR000504 GO:0003723
Tsu01g04474 761 Gene3D - 365 448 IPR012677 -
Tsu01g04474 761 PANTHER TRAB DOMAIN-CONTAINING PROTEIN 29 357 - -
Tsu01g04474 761 Gene3D - 449 579 IPR012677 -
Tsu01g04474 761 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 536 IPR000504 GO:0003723
Tsu01g04474 761 SMART rrm1_1 372 439 IPR000504 GO:0003723
Tsu01g04474 761 SMART rrm1_1 466 532 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04474 Tsu-Chr1 52401959 52409642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04474 336 539 Eukaryotic Initiation Factors Gene Family AT1G49760 22.845 7.54e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04474 - K12893 gmx:100796509 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04474 01 52401959 52409642 Tsu01g04474 01 52401959 52409642 ECH