Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04462 ATGGATGGTGATCATAACAAGTTAGGTAATGTGCATGAAAAAAATGCTGATGTTGGACCCGAAACATCGAATAATTTGGACTTGAATGTGGAGCAAAACAGTTGCAGTCCGAATGTTGTTCATGCTAATGGCTCTCAATCTGGTGTTGCCTCAGCAAATGTAGTCTGCAGCAATGCAATATTGGGAATTGGTACGGTATTTGAGTCTGATGAACATGCATACAGATTCTATAATAAGTATGCCACATTGATGGGTTTCAATGTTAGAAAAGATTGGATAAATAGGAGTAAGGTACATGGTATGGTGGTTTCTAGGAAATTTACCTGCTCGAAAGAGGGATACCGTAGGAAAGACAAGAGAGATGAAAATGTGAAGAAACATCGGAAGGAGACGAGAACTGGTTGTTTGGCGCACATGATCATCACTCGTCAACCAGACGGAAAATACCAGGTTACTCATTTTGAAGGACAACATAATCATGATGATATAAACTCGATTAACTCTAAGATGTTATTACTAGAGTTGCAAAATGAAATTAATGTTGCTCAAGCTGTGGAGGTTGACTCGTATGATAAATTGGAACCCAAATCTAGGTCAGCATTAAGTatgatgaataaaaaattagatgCACGTGATTCTCTTGATCAACAGTCCATGAATTATGACAACTACCTTCATTCTGTAAGGGAAAGAGATATGAGTAAAGGAGAAGTGGGGCGTTTGCTTGGTTATTTTCAAAGGCAACACTTTGAAAATCCAACATTTTTTCATGCCATACAGCTTGATGTTGATGACAAGGTAACAAATGTATTTTGGGCTGACGACAATATGGTGGTTGATTACGACCACTTTGGGGACGTTGTTTGTTTAGATACAACATGCAGAACAAACAGAGCTCTGCGGCCATTTGTACAGTTTTTAGGTGTTAATCATCACAAACAAGTATTAATATTTGCTGCTGCATTTTTGTATGATGAGACCATTGAATCATTTAATTGGTTATTTCGAACATTCATCAGCGCAATGTCTGGGAAAAAGCCAAAGGCCATTATCACAGAACAAGATGCTACAATCATTGAAGCAGTCAATATGGTTTTACCTGAAACAAATCGGTACACATGTGTATGGCAGATGTATGAAAATACTCTGAAACACCTCAGCCATTTCGTTAAAGATGCTGAATCCTTTGCAAATGATCTAAGGAGTTGTATATATGACCCCAAGGATGAGGAAGAATTTTCCCATGCTTGGGAGGCTATGCTGAAGAAGTATAGCCTCCAGCAAAATGAATGGTTGAGATGGATGTATAGAGAAAGGGAGAAGTTGGCTGTTTTCTTTGGTCAGAATACCTTTTTTGTAGATGTCAAGGGCTTTCATTTAGGTGAGGTTTTGTCTCATAATCTTAGAAGTTATCTAAATCCTGACCTTGATGTCGTTCAATTTTTTAACCATTTTGAAAGGGTGGTAGATGAGCAACGCTATAAAGAAATAGAAGCCGGTGATGAAATGAAGGGATGTTTTCCAAAGCTAATGGGTAATGTGGTTATGTTGAAACATGCAAGTGTTGCTTATACTCCAAGAGCATTTGAAGTATTTCAGCAAAGATATGAGAAATCTTTGAATGTTCTTGTCAACCAGCACAACGTAGATGGCTCTTTGTTTGAGTATAAAGTGAATACATTTGGCCAGGCTAGACAATACAGTGTCACCTTCAATTCTTCAGATGATACAGTTGTCTGCAGTTGTATGAAGTTTGAACATGTTGGTTTTCTGTGTAGCCATGCACTAAAAGTTCTTgataatagaaacataaaagTAGTTCCATCTCGTTACATCTTGGAGAGATGGACAAAAGATGCAAGGTTGGCAAATATCAGGGAGATTAAACAATGTAAAATGCAAGATAATCCTAAGATGGTTGTAGCAAGCTGTTACAAAGATTTGTGCCACAGACTTGTCAAGTTATCAGCAAGAGCTTCTGAATCCGTGGAAGCTTATCAATTTGCTGTGAGGCAGCTTGATGAAGTGATGGAAGGAGTGCAGAAAATCTTGATTTTGAAAGGAGAGGAAGCACAAGTTATCACCTCAAATAGTATTCATGCAGATGGTTCAGAAAGTGAGCCTGCAGAGATCTTTCAGAATGGACATGCAACTGAGGATCAGGATGTAAGTAACAGAGTAAGCGGAGAAATTGACAGGAGCGCTACACAGGATATTGCCCAAACAACGTTGAATTATAATCAAACGGATTCAGATAGGATTTTAAATGTAGAAGTACATCCTCCAAATACCGTTGTCTGCATTTCAAGCCCCTCATCTCCATATGTTTCATCTCAATCCGTGACACCAAATTCCCTTTTGCAGGGCTTATTTGGTTTTGAAGCCAATCAAGTGGTTCAATGTATGTATGAACAGCCTGGTCTTGTGTTGAACCATCAATCTAATACTAACCTGTTCCAACCGGCAATCTACTATTCTAATCAACAGAGTTCTCCTCGCCGATCTCAACTATCTCAGGAGCCTATAATCCAAAACACATACCATGAATCCATGCCAAGCAATAATCAGATGCGACAGGGGATGGATCTTGATATCCAAAATcctcattcagaatcttgtgtCTTGCTTCCGACCCTGCACAACGTATTAAAGGACCATGGTTGA 2664 0.3814 MDGDHNKLGNVHEKNADVGPETSNNLDLNVEQNSCSPNVVHANGSQSGVASANVVCSNAILGIGTVFESDEHAYRFYNKYATLMGFNVRKDWINRSKVHGMVVSRKFTCSKEGYRRKDKRDENVKKHRKETRTGCLAHMIITRQPDGKYQVTHFEGQHNHDDINSINSKMLLLELQNEINVAQAVEVDSYDKLEPKSRSALSMMNKKLDARDSLDQQSMNYDNYLHSVRERDMSKGEVGRLLGYFQRQHFENPTFFHAIQLDVDDKVTNVFWADDNMVVDYDHFGDVVCLDTTCRTNRALRPFVQFLGVNHHKQVLIFAAAFLYDETIESFNWLFRTFISAMSGKKPKAIITEQDATIIEAVNMVLPETNRYTCVWQMYENTLKHLSHFVKDAESFANDLRSCIYDPKDEEEFSHAWEAMLKKYSLQQNEWLRWMYREREKLAVFFGQNTFFVDVKGFHLGEVLSHNLRSYLNPDLDVVQFFNHFERVVDEQRYKEIEAGDEMKGCFPKLMGNVVMLKHASVAYTPRAFEVFQQRYEKSLNVLVNQHNVDGSLFEYKVNTFGQARQYSVTFNSSDDTVVCSCMKFEHVGFLCSHALKVLDNRNIKVVPSRYILERWTKDARLANIREIKQCKMQDNPKMVVASCYKDLCHRLVKLSARASESVEAYQFAVRQLDEVMEGVQKILILKGEEAQVITSNSIHADGSESEPAEIFQNGHATEDQDVSNRVSGEIDRSATQDIAQTTLNYNQTDSDRILNVEVHPPNTVVCISSPSSPYVSSQSVTPNSLLQGLFGFEANQVVQCMYEQPGLVLNHQSNTNLFQPAIYYSNQQSSPRRSQLSQEPIIQNTYHESMPSNNQMRQGMDLDIQNPHSESCVLLPTLHNVLKDHG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04462 887 SMART 26again6 578 605 IPR006564 GO:0008270
Tsu01g04462 887 Pfam MULE transposase domain 287 381 IPR018289 -
Tsu01g04462 887 Pfam FAR1 DNA-binding domain 75 161 IPR004330 -
Tsu01g04462 887 ProSiteProfiles Zinc finger SWIM-type profile. 567 603 IPR007527 GO:0008270
Tsu01g04462 887 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 756 IPR031052 GO:0006355
Tsu01g04462 887 MobiDBLite consensus disorder prediction 1 23 - -
Tsu01g04462 887 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 9 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04462 Tsu-Chr1 52285734 52289602 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu01g04462 MULE 2e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04462 - K17604 gmx:100809803 1343.95