Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04461 ATGGGATTTCTCCGGCgactctttggcgccaaaaaaCCGGCTCCTCCCTCTGATGGGTCGGCTAACAAATCTGATAAAGACAAACACAAGAAAAAATGGAGCTTCTCCAAACAAAGTGGCAGAAGAAAGTCACTCCCGCTACCTCCGCCGCAGCAATCAACTGACTTCACCCAATTTGACTCCTCAACTTCCTTAGAACGTAACAAACATGCAATTGCTGTTGCTGCCGCTACAGCAGCAGTGGCTGAGGCTGCTCTAACCGCCGCACGTGCCGCTGCTGAGGTGGTCAGACTTACAAGCAACGGTGTAGGTGGAAGTAGTACCGTAAGCAGACCCAAAGCGCGTGTTGACCAGCTACGGTTGCCGGTGGAGACTGCCGCCGTTACAATACAGTCAGCTTTCCGCGGTTATTTGGCTAGGAGGGCGTTGAGAGCACTTAAATCATTGGTAAAGTTACAAGCATTGGTTAGGGGCCACATAGTGAGAAAACAAAGTGCAGATATGCTTAAGCGTATGCAAACATTGGTGAGACTGCAGACACAGGCACGTGCAAGTCGTGCCCACTTATCATCAACATCAGATAATTTGCATTCTTTTAAGTCTTCACTATCTCATTACCCTGTCCCTGAAGAATATGAGCATCCACATCCTATCTACAGTACAAAATTCGGTGGATCTTCCATCCTCAAGAGATGCAGCTCCAATGCAAATTTTAGGAAGATTGAGTCAGAGAAACCACGTTATGGTTCCAATTGGTTAGACCCTTGGATGCAAGATAACTCATGTAACAAAATCAAAGACACTTCAACAAAGAATCGACAAGCCGAAAATCAAAAAATCGACAAGATTCTCGAAGTAGATACTTGGAAGCCACATGATTCTCCATCAAAACATACAACAAAACTTCAAAATCAAAGTCTCTCACGTACTGCTGATAATAGTCCACAAACATTTTCTGCTTCTTCAAAAACTGGAAATGGTGTAAGGAGAGGTACACCCTTTACACCTACAAGGAGTGAGTGTTCATGGAGTTTCTTAGGTGGATATTCTGGTTACCCTAATTACATGGCAAACACTGAATCTTCTAAAGCTAAGGTTAGATCACAAAGTGCACCAAGACAAAGGGTTGAGTTTGAGGGATGCAGTTCTACAAGAAAACCTTTTCAAGGATTTTGGGAAGTGGGGCCTACTAATTCAGACCAAGATTCTGAATATGAATATTTAAGGAACAACAAAGTTTCACCTACTTTGAGTCGTTTTAATAGAATTGgaagtaataataatttaaggtGA 1293 0.4215 MGFLRRLFGAKKPAPPSDGSANKSDKDKHKKKWSFSKQSGRRKSLPLPPPQQSTDFTQFDSSTSLERNKHAIAVAAATAAVAEAALTAARAAAEVVRLTSNGVGGSSTVSRPKARVDQLRLPVETAAVTIQSAFRGYLARRALRALKSLVKLQALVRGHIVRKQSADMLKRMQTLVRLQTQARASRAHLSSTSDNLHSFKSSLSHYPVPEEYEHPHPIYSTKFGGSSILKRCSSNANFRKIESEKPRYGSNWLDPWMQDNSCNKIKDTSTKNRQAENQKIDKILEVDTWKPHDSPSKHTTKLQNQSLSRTADNSPQTFSASSKTGNGVRRGTPFTPTRSECSWSFLGGYSGYPNYMANTESSKAKVRSQSAPRQRVEFEGCSSTRKPFQGFWEVGPTNSDQDSEYEYLRNNKVSPTLSRFNRIGSNNNLR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04461 430 PANTHER CALMODULIN-BINDING PROTEIN 307 427 - -
Tsu01g04461 430 SMART iq_5 122 144 IPR000048 GO:0005515
Tsu01g04461 430 SMART iq_5 145 166 IPR000048 GO:0005515
Tsu01g04461 430 Pfam Protein of unknown function (DUF4005) 314 377 IPR025064 -
Tsu01g04461 430 Gene3D - 122 189 - -
Tsu01g04461 430 MobiDBLite consensus disorder prediction 39 60 - -
Tsu01g04461 430 MobiDBLite consensus disorder prediction 1 60 - -
Tsu01g04461 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 167 IPR027417 -
Tsu01g04461 430 PANTHER IQ-DOMAIN 5-RELATED 307 427 - -
Tsu01g04461 430 PANTHER IQ-DOMAIN 5-RELATED 1 306 - -
Tsu01g04461 430 ProSiteProfiles IQ motif profile. 147 174 IPR000048 GO:0005515
Tsu01g04461 430 Pfam IQ calmodulin-binding motif 126 144 IPR000048 GO:0005515
Tsu01g04461 430 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515
Tsu01g04461 430 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Tsu01g04461 430 PANTHER CALMODULIN-BINDING PROTEIN 1 306 - -
Tsu01g04461 430 MobiDBLite consensus disorder prediction 286 335 - -
Tsu01g04461 430 MobiDBLite consensus disorder prediction 298 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04461 Tsu-Chr1 52278628 52284007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04461 1 390 IQD Protein Family AT5G62070 48.058 1.76e-58 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04461 - - gmx:100783694 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04461 01 52278628 52284007 Tsu01g04461 01 52278628 52284007 ECH