Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04458 ATGGGGTTTGAGAGTGTGAACAGTTCTTTTAAGGTTGCAAGACTTGTCACTGATTTTTCAATACCCTTTTCCAGTTCAATGCAAAATTCTTCTACCTTTTTCTCAACTCAAAGAAAAATGGAGGGTCAGAGTGAGATTGGTCTCACCAGTGAAAGTTTAGATACTAGTATGATAGGGAGAATGAGGGAGGATGAGTATGAAAGTCGGTCCGGAAGCGATAACTTTGATCTTGAAGGAATATCTGGTGATGATCAGGATGGTGATGATGGTCAgcgcaagaggaagaagagataTCATAGACACACTCCTAATCAAATTCAAGAGCTTGAGTCtttCTTCAAAGAGTGTCCTCATCCTGATGAAAAGCAAAGGTTGGATCTTAGTAAGAGACTTGGCTTGGAAAATAAACAAGTCAAGTTCTGGTTTCAGAATCGTCGAACCCAAATGAAGACTCAGCTGGAAAGACATGAGAACATAATGCTTAGGCAAGAAAATGACAAGCTAAGAGGGGAGAATAGTATGATGAAAGAAGCAATGGTGAATCCAATATGTAACAACTGTGGTGGACCAGCAATTCCTGGCCAAATTTTGTTCGAAGAGCACCAGATTAGAATTGAAAATGCTCGTCTAAAAGACGAATTGAACCGTATATgtgccttaacaaacaagttCCTCGGCAAACCGATATCATCATTGGCTAATCCCATGGCTTTACCATCCTCAAATTCTGGTCTTGAACTTGGTATTGGAAGGAATGGTTTTGGTGGCGGTTCAAGCTCTCACGGACATTCTTTACCAATGGGACTTGATCTTGGAGATGGTCCTGCGATTCCTGGTATTAGGTCGCCAATGGGATTGATGGGAAATAGTAATGATGTTCAGCTTGAGAGATCGGTGCTTATCGATCTTGCATTGGCTGCTATGGATGAATTATTAAAGATGGCTCAGACAGATAATCCTATTTGGATTAAGGGATTGGATGGAGAAAGGGACATATTGAATCATGAAGAGTATGCGAGGTTGTTTTCTTCTTGTATTGGTCCAAAACCCACTGGTTTTGTTTCTGAAGCTACAAGAGAAACTGGCATAGTAATAATCAACAGTTTAGCCCTGATGGAAACTTTGATGGATGCGAATCGATACGCAGATATGTTTCAGTCGATGATAGCTAGAGCGGTCAATCTTGATGTTTTATCGGGTGGCATCGGTGGAACAAGAAACGGTGCTATACATTTGATGCACGCTGAGGTTCAATTGCTTTCACCACTAGTCCCGGTTCGTCAAGTAAAAATCCTTCGGTTCTGTAAGCAGCATGCAGAAGGCGTATGGGCCGTGGTTGACGTTTCTGTTGAGATCGGTCACGATGCTGCCAATGCTCAACCTTTCCTTAGCTGTAGAAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCAAATGGTTACTCCAAGGTCACTTGGATTGAGCATTGGGAGTATGATGAGAGTGTTGTCCACAACCTTTATCGTCCGTTGATTATTTCTGGTTCTGGATTCGGTGCTCATAGATGGATCGCCACCCTCCAAAGGCAGTGTGAAGGCTTGGCTATCCTCATGTCCTCTTCCATCTCAAGTGATGATCACACTGCATTGAGCCAAGCTGGTAGAAGAAGCATGTTGAAGCTGGCACAACGCATGACCAACAACTTCTGTTCTGGTGTTTGTGCTTCATCTGCTAGAAAATGGGACAGCCTTCAAATGGGGACCTTGAGTGATGACATGAGAGTTATGACTAGGAAAAATGTTGATGACCCCGGCGAGCCTCCCGGTATTGTGCTCAGCGCTGCTACATCTGTTTGGATGCCAGTTTCGCGGCAAAGGTTGTTTGATTTTCTGCGTGATGAACGGCTTAGAAGCGAGTGGGACATTTTGTCTAATGGTGGACCAATGCAAGAGATGGTTCACATTGCCAAAGGACAAGGACAAGGAAATTGTGTTTCTCTCCTTCGTGCTAATGCTGTTAATGCGAACGATAGCAGCATGTTGATTCTGCAAGAGACATGGATGGATACATCATGTTCCGTCGTGGTGTATGCGCCTGTTGACGGGCAATCATTGAACGTGGTGATGAGTGGTGGAGATTCTGCGTATGTTGCACTCTTACCTTCAGGCTTTGCCATTGTTCCTGACGGCAATAACTCCTCTAGCTATGGTGCATCAAATGGAACTTCACAGAAAGGCAGCGGCAGCGATGATGGTGGAAGTTTGCTCACAGTTGGATTCCAAATTCTGGTGAATAGTCTTCCATCTGCTAAGCTCACAATGGAGTCAGTTGATACAGTGAACAATCTCATCTCATgcaccattcagaagatcaaagctGCACTTAGAGTTGCATAA 2376 0.4272 MGFESVNSSFKVARLVTDFSIPFSSSMQNSSTFFSTQRKMEGQSEIGLTSESLDTSMIGRMREDEYESRSGSDNFDLEGISGDDQDGDDGQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENSMMKEAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSLANPMALPSSNSGLELGIGRNGFGGGSSSHGHSLPMGLDLGDGPAIPGIRSPMGLMGNSNDVQLERSVLIDLALAAMDELLKMAQTDNPIWIKGLDGERDILNHEEYARLFSSCIGPKPTGFVSEATRETGIVIINSLALMETLMDANRYADMFQSMIARAVNLDVLSGGIGGTRNGAIHLMHAEVQLLSPLVPVRQVKILRFCKQHAEGVWAVVDVSVEIGHDAANAQPFLSCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHNLYRPLIISGSGFGAHRWIATLQRQCEGLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDGQSLNVVMSGGDSAYVALLPSGFAIVPDGNNSSSYGASNGTSQKGSGSDDGGSLLTVGFQILVNSLPSAKLTMESVDTVNNLISCTIQKIKAALRVA 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04458 791 Coils Coil 146 166 - -
Tsu01g04458 791 Pfam START domain 303 525 IPR002913 GO:0008289
Tsu01g04458 791 MobiDBLite consensus disorder prediction 38 56 - -
Tsu01g04458 791 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Tsu01g04458 791 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Tsu01g04458 791 SUPERFAMILY Homeodomain-like 81 152 IPR009057 -
Tsu01g04458 791 CDD homeodomain 94 152 IPR001356 GO:0003677
Tsu01g04458 791 CDD START_ArGLABRA2_like 297 525 - -
Tsu01g04458 791 SMART START_1 302 526 IPR002913 GO:0008289
Tsu01g04458 791 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 36 789 IPR042160 -
Tsu01g04458 791 SUPERFAMILY Bet v1-like 553 785 - -
Tsu01g04458 791 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 36 789 - -
Tsu01g04458 791 ProSiteProfiles START domain profile. 293 529 IPR002913 GO:0008289
Tsu01g04458 791 MobiDBLite consensus disorder prediction 63 104 - -
Tsu01g04458 791 SMART HOX_1 93 156 IPR001356 GO:0003677
Tsu01g04458 791 SUPERFAMILY Bet v1-like 295 526 - -
Tsu01g04458 791 Gene3D - 82 167 - -
Tsu01g04458 791 MobiDBLite consensus disorder prediction 38 57 - -
Tsu01g04458 791 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04458 Tsu-Chr1 52260794 52266287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04458 3 788 Homeobox Transcription Factor Family AT3G61150 57.966 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu01g04458 START 1.1e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04458 K09338 - gmx:100785102 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04458 01 52260794 52266287 Tsu06g03095 06 40795084 40800464 ECH
Tsu05g01224 05 10919133 10925936 Tsu01g04458 01 52260794 52266287 ECH
Tsu01g04458 01 52260794 52266287 Tsu01g04458 01 52260794 52266287 ECH