Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04456 ATGGCTTCTATTTTCAACATTCTAGTATTCTCGTACCTTGTcgttttcaattttcacttaTGTTACGCCATTAAAGACAAAAATGACCAAAACCCAGAAAAACTTTCCCTTCTTTCTTTCAAAGGGTCTCTTcaaaattctcactttctttcttCATGGCACCCTGCAACTCCTCACTGTAACTGGGTTGGTGTAACATGTCAACTCGGACGAGTCATCGAGCTCCAACTTCCTTCTTGTTACCTCAGAAGtaatctctctctgtctctttCGTCTCTGTCGtctctctcatctctcactATACTCAACCTTGAAGATAATCAGTTTTCCGGCGAAATTCCCGGCGAGCTTGGTGGGTTGGTTCAGCTGCAAACACTTAGACTTGGTTCAAATTCGTTCGCCGGAAAAATTCCACCGGCGTTTGGATTTTTGACCAAGCTTACAACACTTGATCTTTCCGGCAATGCATTCACCGGAGATATACCGGAGAGTTTTGGAAACTTGACAAGGCTTCAGTTTCTTGATCTCAGCAACAACTTTCTCTCAGGTTCTCTTCCGATTACTCTCTTCACCGGAACATTGTCTTTGATTTCTATTGATATTTCAAACAACTCGTTTTCCGGCAAGCTTCCGGCGGAAATCGGAAACTGGAAAAATCTCACTGCACTTTACATTGGGATAAACAAGTTGTCTGGTACATTGCCTAAGGAAATTGGTGAGCTTTCAAAGCTTGAAGTTTTGTATTCACCTTCTTGTTTGATCGAAGGTCCTTTACCGGAAGAAATGGAAAAGCTTGAATTGTTGGCTAAACTTGACCTTTCTTATAACCCTTTGAGATGTTCAATTCCAAAGTTTATTGGGaagttgaaaaatttgaaaattttgaaccTTGTTTTTTCTGAGTTGGATGGGTCAATTCCATCTGAGTTAGGAAATTGTTCAAATTTAACTTCTGTGATGCTTTCTTTCAATTCTCTTTCTGGTTCACTTCCTCGAGAGCTTTCTCAGCTTCCTATTAAGACATTTTCAGCTGAAAAGAATCTTCTTCATGGAGCTTTGCCTTCTTGGCTTGGAAAATGGGTTAATGTTGATTCTCTGTTGCTTTCTGCTAACCGTTTTTCTGGTGTGATTCCCCCTGAGCTTGGGAATTGTTCTATGATGGAGCATCTCAGTTTGAGTAGTAATTTGTTGACAGGTTCTATACCTGAGGAGCTTTGTAATGCTGCTTCACTTTTGGAGATTGATCTTGATGATAACTACATTGGTGGTACAATTGAGAAGGCTTTTGTTAACTGTAAGAATCTTACTCAGTTGGTTTTGATGAACAATAAGATTGTTGGTTCTATCCCTAATTACCTTTCTGAGCTTCCTTTGATGGTGTTGGACTTGGACAACAACAATTTTAGTGGACAGATACCTTCTAGTTTGTGGAACTTATCGACACTGATGGAATTTTCTGCTGCTAATAACCAATTAGAGGGTTCTCTTCCTTTGGAGATTGGGAATGCTGTTATTCTACAAAGGCTTGTTCTTAGCAACAATCGTTTGATCGGTACTATTCCTAAGGAAATTGGAAATCTTTTGAGTCTTTCGGTTTTTAATTTGAATGGAAACATGCTCGAAGGAAACATTCCAAGTGAGCTTGGTGATTGCATTTCACTAACTACATTGGACCTTGGAAACAATCAGCTCAATGGCTCTATTCCTGACAAATTGGTGAAACTAAGTGAATTACAGTGCCTGGTTCTTTCGCATAATAATCTCTCGGGCTCTATACCTGCCAAAGAATCTTCGTATTTTCGACAGCTTACGGTTCCTGATTTAAGCTTTGTTCAACACCTTGGTGTGTTGGATCTTTCGCACAATCGATTGTCTGGCACCATACCTGATGAATTAGGGAACTGTGTAGTGGTCGTTGATCTACTGCTTAGCAACAACATGTTTTCTGGCAGCATTCCAAGATCACTCTCGCACTTGACAAATCTAACAACTTTGGATTTGTCTGGAAACTTGTTATCAGGTTCCATTCCACTAGAGCTTGGAGATGCTGTAACACTCCAAGGTTTATATTTGGGACAGAATCAACTCTCAGGTACAATCCCTGAAAATTTTGGAAAGCTGACTCGTTTGGTGAAGCTGAATTTGACAGGAAATATGCTGCATGGTCCAATTCCATTCAGTTTTGGGAACATGAAGGAATTGACTCACTTGGACTTGAGTTATAATGAGCTAATTGGTGAGCTTCCATCCATTATGTCGGGTGTGCAAAGTCTAGTTGGTCTTTATGTGCAGAATAACAGGCTTTCAGGCCATGTCGGCGAGCTTTTCTCAAACTCCATGACATGGAGGATTGAGACAATGAATTTAAGTTGCAATTTCTTCGACGGGAACTTGCCATGGTCGTTGGGAAATCTTTCGTACTTGACAATATTGGATCTTCACAGAAATCTGTTGACCGGAGAGATTCCTTTAGACCTAGGGAATCTAATGCAACTTGAGTATTTTGATGTTTCAGGTAATCAATTATCTGGAAAAATTCCAGAGAAGCTATGCAGCCTAGTTAATTTGAATTACCTAGATTTGTCTCAAAACAGATTGGAAGGGCCTATTCCTAGAACTGGTATTTGCCAAAACCTATCAAGAGTTAGATTTTTGGGAAACAGGAACCTTTGTGGCCAGCTGTTGGGAACAAATTGTGAGGTCAAAAGCATTGGTAGATATGCATTGTTTAATGCATGGAGGCTTGGTGGAATCGCAATCGCAGTCATATTAATAACCTTGATCTTTGCCTTTGTTCTGCATAGATGGATTAGCAGAAAGCAAAATGATCCTGAGGAACTCGAGGATAGGAAACTGAACAGTTATGTGGATCAAAATCTTTACTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTAGCAATGTTTGAGCAGCCTCTTCTGAAGTTAACCTTGGTTGATATCCTCAAAGCTACCGACAATTTCAGCAAGACAAACATAATTGGAGACGGAGGTTTCGGAACTGTGTACAGGGCCACTTTACCAAACGGAAGAACAGTTGCTGTGAAGAAGCTTAGCGAAGCTAAAACGCAGGGTCATCGCGAGTTCATGGCTGAAATGGAAACCTTGGGAAAGGTAAAGCATCAAAACCTAGTTGCATTGCTTGGTTATTGCTCAATGGGTGAGGAGAAACTCCTTGTTTATGAATACATGGTAAATGGAAGCTTAGACCTTTGGTTGAGAAACAGGACCGGGGGACTTGAAATCCTCAACTGGAACAAACGTTACAAAATCGCAACAGGTGCAGCAAAAGGATTAGCTTTCCTCCATCATGGTTTCATACCTCACATCATTCATAGGGATGTTAAAGCTAGCAACATTTTACTAAATGAAGATTTTGAGCCAAAAGTTGCTGATTTTGGACTAGCAAGATTGATCAGTGCATGTGAGACTCATATCACAACTGATATTGCTGGAACATTTGGTTACATTCCACCAGAGTATGGACAGAGTGGAAGATCAACAACAAGAGGCGACGTCTATAGTTTCGGTGTCATTTTACTTGAATTGGTGACCGGCAAAGAGCCGACAGGACCAGATTTCAAAGAGATTGAAGGTGGAAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAGGGACAGGCTGCTGATGTTCTTGATCCTACAGTTCTCGATGCAGATTCTAAGCAGATGATGCTTCAAATGCTTCAGATTGCTTGTGTCTGTCTCTCTGATAATCCTGCAAACAGGCCTACCATGTCTCAAGTGCACAAACTCTTGAAGGGGATGAAAGGCGATATCAGTAATTAA 3840 0.3974 MASIFNILVFSYLVVFNFHLCYAIKDKNDQNPEKLSLLSFKGSLQNSHFLSSWHPATPHCNWVGVTCQLGRVIELQLPSCYLRSNLSLSLSSLSSLSSLTILNLEDNQFSGEIPGELGGLVQLQTLRLGSNSFAGKIPPAFGFLTKLTTLDLSGNAFTGDIPESFGNLTRLQFLDLSNNFLSGSLPITLFTGTLSLISIDISNNSFSGKLPAEIGNWKNLTALYIGINKLSGTLPKEIGELSKLEVLYSPSCLIEGPLPEEMEKLELLAKLDLSYNPLRCSIPKFIGKLKNLKILNLVFSELDGSIPSELGNCSNLTSVMLSFNSLSGSLPRELSQLPIKTFSAEKNLLHGALPSWLGKWVNVDSLLLSANRFSGVIPPELGNCSMMEHLSLSSNLLTGSIPEELCNAASLLEIDLDDNYIGGTIEKAFVNCKNLTQLVLMNNKIVGSIPNYLSELPLMVLDLDNNNFSGQIPSSLWNLSTLMEFSAANNQLEGSLPLEIGNAVILQRLVLSNNRLIGTIPKEIGNLLSLSVFNLNGNMLEGNIPSELGDCISLTTLDLGNNQLNGSIPDKLVKLSELQCLVLSHNNLSGSIPAKESSYFRQLTVPDLSFVQHLGVLDLSHNRLSGTIPDELGNCVVVVDLLLSNNMFSGSIPRSLSHLTNLTTLDLSGNLLSGSIPLELGDAVTLQGLYLGQNQLSGTIPENFGKLTRLVKLNLTGNMLHGPIPFSFGNMKELTHLDLSYNELIGELPSIMSGVQSLVGLYVQNNRLSGHVGELFSNSMTWRIETMNLSCNFFDGNLPWSLGNLSYLTILDLHRNLLTGEIPLDLGNLMQLEYFDVSGNQLSGKIPEKLCSLVNLNYLDLSQNRLEGPIPRTGICQNLSRVRFLGNRNLCGQLLGTNCEVKSIGRYALFNAWRLGGIAIAVILITLIFAFVLHRWISRKQNDPEELEDRKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILKATDNFSKTNIIGDGGFGTVYRATLPNGRTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSMGEEKLLVYEYMVNGSLDLWLRNRTGGLEILNWNKRYKIATGAAKGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVGQKIKKGQAADVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMSQVHKLLKGMKGDISN 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04456 1279 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 785 1274 - -
Tsu01g04456 1279 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 340 775 - -
Tsu01g04456 1279 SMART LRR_sd22_2 217 243 - -
Tsu01g04456 1279 SMART LRR_sd22_2 144 170 - -
Tsu01g04456 1279 SMART LRR_sd22_2 853 881 - -
Tsu01g04456 1279 SMART LRR_sd22_2 659 680 - -
Tsu01g04456 1279 SMART LRR_sd22_2 731 757 - -
Tsu01g04456 1279 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Tsu01g04456 1279 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Tsu01g04456 1279 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 13 100 - -
Tsu01g04456 1279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1120 1132 IPR008271 GO:0004672|GO:0006468
Tsu01g04456 1279 Gene3D Transferase(Phosphotransferase) domain 1 1074 1278 - -
Tsu01g04456 1279 Gene3D Phosphorylase Kinase; domain 1 960 1073 - -
Tsu01g04456 1279 SUPERFAMILY RNI-like 75 454 - -
Tsu01g04456 1279 ProSitePatterns Protein kinases ATP-binding region signature. 1004 1027 IPR017441 GO:0005524
Tsu01g04456 1279 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 92 337 - -
Tsu01g04456 1279 SMART LRR_typ_2 611 635 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 805 829 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 527 551 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 853 878 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 575 599 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 265 289 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 144 167 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 731 755 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 168 192 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 659 683 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 96 120 IPR003591 -
Tsu01g04456 1279 SMART LRR_typ_2 313 337 IPR003591 -
Tsu01g04456 1279 SUPERFAMILY L domain-like 600 892 - -
Tsu01g04456 1279 Pfam Protein tyrosine and serine/threonine kinase 1001 1270 IPR001245 GO:0004672|GO:0006468
Tsu01g04456 1279 ProSiteProfiles Protein kinase domain profile. 998 1270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04456 1279 Pfam Leucine rich repeat 140 179 IPR001611 GO:0005515
Tsu01g04456 1279 SUPERFAMILY Protein kinase-like (PK-like) 979 1270 IPR011009 -
Tsu01g04456 1279 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 92 337 - -
Tsu01g04456 1279 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 340 775 - -
Tsu01g04456 1279 SMART serkin_6 998 1270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04456 1279 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 785 1274 - -
Tsu01g04456 1279 SUPERFAMILY L domain-like 410 595 - -
Tsu01g04456 1279 PRINTS Leucine-rich repeat signature 853 866 - -
Tsu01g04456 1279 PRINTS Leucine-rich repeat signature 614 627 - -
Tsu01g04456 1279 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 13 100 - -
Tsu01g04456 1279 Gene3D Ribonuclease Inhibitor 341 604 IPR032675 -
Tsu01g04456 1279 Gene3D Ribonuclease Inhibitor 277 336 IPR032675 -
Tsu01g04456 1279 Gene3D Ribonuclease Inhibitor 605 904 IPR032675 -
Tsu01g04456 1279 Gene3D Ribonuclease Inhibitor 193 276 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04456 Tsu-Chr1 52227632 52231868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04456 29 1271 Receptor kinase-like Gene Family AT5G07280 58.607 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Tsu01g04456 PK_Tyr_Ser-Thr 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04456 - - gmx:100780446 2061.19