Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04455 ATGGCTCCGTCGGCGGAATACAACGGCAATTCCTCCACCGGCGAGTCTCAAAGATCGAATCCAACGCCGTTTCTCACCAAGACTTACCATCTCGTTGATGACCGCACCATCAACGACGTGATTTCGTGGAACGATACTGGAACTTCCTTCATTGTTTGGAATCCTACCGTTTTCGCTAGGGATTTGCTTCCTAAATATTTCAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTATgGATTTAAAAAAGTTGTACCTGATCGGTGGGAATTCTCTAACGAATGTTTCCGAAGAGGCGAAAAACGCCTTCTGTCTGATATTCAGCGACGGAAAATCGTTTCAGCATCTCCGGCGGCGGCTTCAAATGCCGGTACAAATGCGATTCCAACGGGGAAGACGATCATATCACCGTCAATCTCAGGGGAGGAGCAGGTTATTTCTTCGAATTCTTCGCTGGCGGTTGCGCCGGCGGAGCTATTGGAGGAGAACGAGAGGCTGAGAAAGGAGAATATACAGTTAGCGAAGGAAATAGAGGACATAAAATCGCTCTACAACAATATATTGAATCTTTTGTCAAATTATGCCAAATCTCAAGCGGAAGGTGCTGCGCAAAGAAAAGAGTGTTGTTCCACGCTTCATTTGGTGCCGGAGGATCAGTGCAACGGAGAAGATGCAGCGGCGATGGCGGTGGAGGATATAAACCCGAAGCTGTTTGGGGTGACGCTAGGTACGAAACGAGCGAGAGAAGAAGGACGGTGTGTGGAGGATAATACGGTGTTGAGCTTGCATCATCAACCAGTTTATGCGAATGTGAAATCAAAGCCGTTGGATTCAATTAATGGCGAAAAGAGGAAAACGTTGTGGCTAAATAGGTGCTATAGAGAGAATCAGAGTGTATGTAATTGA 915 0.4645 MAPSAEYNGNSSTGESQRSNPTPFLTKTYHLVDDRTINDVISWNDTGTSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNECFRRGEKRLLSDIQRRKIVSASPAAASNAGTNAIPTGKTIISPSISGEEQVISSNSSLAVAPAELLEENERLRKENIQLAKEIEDIKSLYNNILNLLSNYAKSQAEGAAQRKECCSTLHLVPEDQCNGEDAAAMAVEDINPKLFGVTLGTKRAREEGRCVEDNTVLSLHHQPVYANVKSKPLDSINGEKRKTLWLNRCYRENQSVCN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04455 304 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 286 IPR027725 -
Tsu01g04455 304 SUPERFAMILY "Winged helix" DNA-binding domain 19 113 IPR036390 -
Tsu01g04455 304 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu01g04455 304 Gene3D - 16 114 IPR036388 -
Tsu01g04455 304 Coils Coil 166 186 - -
Tsu01g04455 304 MobiDBLite consensus disorder prediction 1 22 - -
Tsu01g04455 304 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu01g04455 304 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu01g04455 304 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu01g04455 304 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 11 286 - -
Tsu01g04455 304 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu01g04455 304 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04455 Tsu-Chr1 52222912 52224174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04455 13 304 HSF AT5G62020 47.134 8.52e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu01g04455 HSF_DNA-bind 5.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04455 K09419 - gmx:100780987 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04455 01 52222912 52224174 Tsu01g04455 01 52222912 52224174 ECH
Tsu06g03102 06 41037227 41044740 Tsu01g04455 01 52222912 52224174 PCT