Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04451 ATGGTTAACTCCATAACACACTTCAATTTCAatctcatcatcttcttcttcatcctccTCCTTGTTAGCAATAATACTGCAAAATCACAATCAACAATACAACCAGCATCTCCTTTAGCATCACCACCAACAATCTTATGGGATGTATCTTCTATTGCTGTAATTGTTGGAGCAGTCATTGTCACACTCATCTTAATCTTCATCTTCTCATTGTTCATTCGCCGCATCACAAATCCATCAATGGCAGAGTTAACAAAACGTGAACTTTGCATTGGTATCAACCCTCAAATTCTTAAAACTTtcccaattttattattttcttccatcATCAACCATCTTAAGGAAAATGAAGCTCCAGAACAATGTACTATTTGTCTTGCTGATTTCAACAGCAATGATACAATTCGTGTGTTGCCTCAATGTAACCATGTTTTTCATCCACCATGTATTGATGCTTGGCTTTCTAACCATGCTACTTGTCCTGTTTGTCGTACTAATCTAAATCATCAATGTTCATGTCATTTTGCCATTGCTATCGACACACAAGTCAACGGTGAACGTGGAAATGAAAGCGTATAA 579 0.3368 MVNSITHFNFNLIIFFFILLLVSNNTAKSQSTIQPASPLASPPTILWDVSSIAVIVGAVIVTLILIFIFSLFIRRITNPSMAELTKRELCIGINPQILKTFPILLFSSIINHLKENEAPEQCTICLADFNSNDTIRVLPQCNHVFHPPCIDAWLSNHATCPVCRTNLNHQCSCHFAIAIDTQVNGERGNESV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04451 192 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Tsu01g04451 192 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 185 - -
Tsu01g04451 192 Pfam Ring finger domain 121 164 IPR001841 -
Tsu01g04451 192 SUPERFAMILY RING/U-box 115 170 - -
Tsu01g04451 192 PANTHER RING FINGER DOMAIN-CONTAINING 6 185 - -
Tsu01g04451 192 SMART ring_2 122 163 IPR001841 -
Tsu01g04451 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 170 IPR013083 -
Tsu01g04451 192 CDD RING-H2_PA-TM-RING 121 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04451 Tsu-Chr1 52193593 52194171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04451 2 172 Rapid Response to Elicitors AT3G05200 34.615 2.77e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04451 K10664 - aprc:113871817 127.487