Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04441 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGTGTTAGAAGAGGTGCTTGGACtcctgaagaagatcaagctTTAGCTGACTACATCAACAAACATGGCCATGGAAGTTGGCGTACACTCCCTAAACATGCAGGTCTCCTACGATGTGGTAAAAGTTGTCGACTTAGGTGGATAAACTATCTTCGTCCTGGCATCAAGCGTGGCCCATTTACTAGTGAAGAAGAAACAACTATTATTCAACTTCATGCCTTGCTGGGCAACAGGTGGGCTGCTATAGCATCCCAACTACAAGGAAGAACAGACAACGAGATTAAGAACTATTGGAACACTCATATAAAGAAGCGCGTCCTTCAATCACAAGGGGAAAAACATTCATGTCTCATTCCTGATACGAATGTCCAGTCTAATTCTCCGTCTACACGCCACATGGTACAGTGGGAAAGTGCAAGGGTTGAGGCCGAGACAAGGTTGTCAATGGAATCCACATTGGTTAATTCAGGATCCACGGCAAAAACAGGTCCCGATTACTTTCTTCAACTTTGGCATTCTGAGGTTGGAGAGGCGTTTCGCAAAATCAAAGGAAAGGAAGAAGCATCGTCATCTTCACTATCATCCTCAAAATTGGAGGAGGAGTCATGTTCAAATGTCTCATTGCAGGAGAAAAACACTGGAACACAAAGCCTGAAAGTGTCAACACCAAAGCTTGAAGATGTCAACACAACTCAAGAACAAAAAGCAAGTAGCTACAGACCAAAGCTTGAAGATGATAGAGCTGGTTCAGATTCAGGCAATTATGAATTTCTTGATACTTCTGATTCTGCACTAAAGCACCTTTTACACATGCCTGATGATGACATAGGATTCTTGGGACAAACTGACAATTTCTTGAATCTCCTTGATAGTAGATGTGACTAA 915 0.4175 MGKAPCCEKHGVRRGAWTPEEDQALADYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEETTIIQLHALLGNRWAAIASQLQGRTDNEIKNYWNTHIKKRVLQSQGEKHSCLIPDTNVQSNSPSTRHMVQWESARVEAETRLSMESTLVNSGSTAKTGPDYFLQLWHSEVGEAFRKIKGKEEASSSSLSSSKLEEESCSNVSLQEKNTGTQSLKVSTPKLEDVNTTQEQKASSYRPKLEDDRAGSDSGNYEFLDTSDSALKHLLHMPDDDIGFLGQTDNFLNLLDSRCD 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04441 304 CDD SANT 69 112 IPR001005 -
Tsu01g04441 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu01g04441 304 SMART sant 66 114 IPR001005 -
Tsu01g04441 304 SMART sant 13 63 IPR001005 -
Tsu01g04441 304 CDD SANT 16 61 IPR001005 -
Tsu01g04441 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 293 - -
Tsu01g04441 304 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tsu01g04441 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu01g04441 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu01g04441 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu01g04441 304 Gene3D - 69 142 - -
Tsu01g04441 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu01g04441 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu01g04441 304 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 293 - -
Tsu01g04441 304 MobiDBLite consensus disorder prediction 199 247 - -
Tsu01g04441 304 MobiDBLite consensus disorder prediction 199 264 - -
Tsu01g04441 304 MobiDBLite consensus disorder prediction 248 262 - -
Tsu01g04441 304 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04441 Tsu-Chr1 52115601 52117632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04441 1 289 MYB Transcription Factor Family AT3G61250 51.815 6.71e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g04441 Myb_DNA-binding 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04441 K09422 - gmx:100782075 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04441 01 52115601 52117632 Tsu01g04441 01 52115601 52117632 ECH