Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04407 ATGACATTGTTGTATCTAACCACGGTGGAGCCATGGCGTGTTAATTCAGAAGAACATTCACCTATTGTGAAGATGACGCTCGTTACAAATGCTCGTGAAACTAGTGCTCTTTGTTTGGATGGGAGTTTACCTGCGTATCATTTGGACAAAGGATATGGAAATGGGAAAAATAATTGGCTTCTACAATTCGAGGGTGGTGGATGGTGCAATGACCTGGCATCATGCTTAGTGAGAGCACAAACTCATAGGGGTTCATCACATTATATGACTAAGCAGGAGTTGTTCTCTGGTATTTTAAGCAACAATGCTACCCTTAATCCAGACTTTTATAATTGGAATAGGGTGAAGTTGAGATACTGTGATGGAGCTTCATTTACTGGAAACAAAGTGTTCAATAATGGGACAACAAAGCTCTACTTCAAAGGGCAAAAGATTTGGGAAGCCATTATTCAAGACCTTCTACCAAAAGGtttaaaaaatgcaaataagGCTTTGCTTTCAGGCTGTTCAGCAGGAGGTTTAGCTACCTTTCATCATTGTGACAACTTCACCAAGTATTTGCCAACAAATGCTAGTGTTAAATGCATGAGTGATGCAGGCTTTTTTCTTGATGAAAAAGATATCAGTTTTAACTACACTATGAGGAACTTCTTCAAAAGTGTAGTTACATTGCAGGGTGTAGAGCAGGATCTAAATAGAAATTGTACCAAAGGGTTGTCCTCATCTGCATATTTGTGCTTCTTTCCGCAATATGTGTTGAAATATATATCGAAACCATATTTTATCTTGAACCCTGCCTATGATGTATACCAATTCAGTAATGTATTGGTGACACCTTCATCCGATCCCCACGGACAATGGAACCATTGCAAGCATAACCTATCGACATGTACACCAGCCAAAATTGATACATTGCAAGGTTTTAGGCTCAAAATGATTAAGGTTTTGCAACCGTTCTACTTATATTCAAACAACGGTGGAATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAAATGCAAGAAACATGGTTTCGATATGATTCTCCAAGAATAAACAATAAGACTATTGCAAAAGCAGTTGATAAGGTCATTTGGAAGATCATACTGGAAATTTGTCAACAAATTTTCCAGTTCTCTAATATAAAAGGATTTAGAGGAGATTTTTATTCAGAATCATACAAGTATACACAATGGTTAATACTAGGCAGATAG 1218 0.3703 MTLLYLTTVEPWRVNSEEHSPIVKMTLVTNARETSALCLDGSLPAYHLDKGYGNGKNNWLLQFEGGGWCNDLASCLVRAQTHRGSSHYMTKQELFSGILSNNATLNPDFYNWNRVKLRYCDGASFTGNKVFNNGTTKLYFKGQKIWEAIIQDLLPKGLKNANKALLSGCSAGGLATFHHCDNFTKYLPTNASVKCMSDAGFFLDEKDISFNYTMRNFFKSVVTLQGVEQDLNRNCTKGLSSSAYLCFFPQYVLKYISKPYFILNPAYDVYQFSNVLVTPSSDPHGQWNHCKHNLSTCTPAKIDTLQGFRLKMIKVLQPFYLYSNNGGMFINSCFAHCQSEMQETWFRYDSPRINNKTIAKAVDKVIWKIILEICQQIFQFSNIKGFRGDFYSESYKYTQWLILGR 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04407 405 Pfam Pectinacetylesterase 18 364 IPR004963 GO:0016787
Tsu01g04407 405 PANTHER PECTIN ACETYLESTERASE 9 17 363 - -
Tsu01g04407 405 PANTHER NOTUM-RELATED 17 363 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04407 Tsu-Chr1 51873171 51875787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04407 1 362 Carbohydrate Esterase AT5G23870 61.602 1.67e-170 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04407 K19882 - gmx:100802358 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04407 01 51873171 51875787 Tsu01g04407 01 51873171 51875787 ECH