Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04406 ATGATTCCTTTCATATctctgaagaagatgaagtttaCTGTGACTTTGGCATTATTGTGTATAATCACGGTGGAGCCATGGCGTGTTAACTCAGAAGAACAGAGGCTTCTAGTGAACATGACGCTCGTTGCCAAGGCACGTGATACTGGTGCTCTTTGTTTGGATGGAAGTTTACCGGCGTATCATTTGGACAGAGGATATGGAGCGGGTCAAAACAATTGGCTTCTACAATTTGAGGGAGGTGGGTGGTGCAATGACTTGCCATCATGCTTGGAAAGAGCACTAACTCGCAGGGGTTCTACACGTTATATGACCAAATGGGAGGTCTTCTCTGGCATATTAAGCAACAATGCCACCCTTAATCCAGACTTTTATAATTGGAATAGGGTGAAGCTGAGATACTGTGATGGAGCTTCATTTACTGGAAACAGACTGTTCAATAATGGGACAACAAAGCTTTACTTTAAAGGGCAAAAGATTTGGGAAGCCATTATTGCCGACCTTCTACCCAAAGGTTTAGGAAAGGCACACAAGGCTTTGCTTTCAGGCTGTTCAGCAGGAGGTTTAGCCACCTTTCATCATTGTGATAACTTCACCAAGTATTTGCCAATTAATGCTAGTGTTAAATGCTTGAGTGATGCAGGTTTTTTCCTTGATGGAAGAGATATCAGTTTGAACCACACTATGAGGTACTTTGTCAAAAGTCTAGTTACATTGCAGGGGATAGAACAAAACCTTAATAGAAACTGCACCAGCGCGTTGTCCTATCCAGACTTGTGCTTCTTTCCACAATATGTGTTGAAATATATATCAACACCATATTTTATCTTGAATTCCGCCTATGATGTATTCCAATTCCATCATATATTGGTGCCACCTTCAGCTGACCCCCGCGGGCACTGGAACCACTGTAAGCTGAACCCAGCGGCATGCACACCAGACCAAATTGATACATTGCAAGGGTTTAGGCTCAGCATGACTGCAACTTTGAAAcccttttacttttattcaagtAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCACTGCCAAAGTGAATTGCAAGAAACATGGTTTGGAGATGATTCTCCAAGAATAAACGACAAGGTACCAATCTTTGACATGGTTTGGAGATGA 1140 0.4105 MIPFISLKKMKFTVTLALLCIITVEPWRVNSEEQRLLVNMTLVAKARDTGALCLDGSLPAYHLDRGYGAGQNNWLLQFEGGGWCNDLPSCLERALTRRGSTRYMTKWEVFSGILSNNATLNPDFYNWNRVKLRYCDGASFTGNRLFNNGTTKLYFKGQKIWEAIIADLLPKGLGKAHKALLSGCSAGGLATFHHCDNFTKYLPINASVKCLSDAGFFLDGRDISLNHTMRYFVKSLVTLQGIEQNLNRNCTSALSYPDLCFFPQYVLKYISTPYFILNSAYDVFQFHHILVPPSADPRGHWNHCKLNPAACTPDQIDTLQGFRLSMTATLKPFYFYSSRGGMFINSCFAHCQSELQETWFGDDSPRINDKVPIFDMVWR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04406 379 Pfam Pectinacetylesterase 32 370 IPR004963 GO:0016787
Tsu01g04406 379 PANTHER PECTIN ACETYLESTERASE 9 31 370 - -
Tsu01g04406 379 PANTHER NOTUM-RELATED 31 370 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04406 Tsu-Chr1 51860624 51869408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04406 6 371 Carbohydrate Esterase AT5G23870 66.213 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04406 K19882 - gmx:100802358 630.172