Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04404 ATGCTTTTAAACCAGATATGCAATGAAGGGCGTCAGAATGCATTATCCGAGATCTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCAACAACCGAAGTAGCATCCTACATCATAGATGCTCATTTATGGGGTTTCAGGGAGGCCTGTGTCGAGCATCACTTACAACATGGTCAAGGTGTTGCGGGGAGGGcttttttgtctcaaaacatGAGCTTTTGCTCAAACATTACACAATTCTGTAAAACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACAGGCTGTTTTGCGATCTGTTTGCGGAGTTTGTATACAGGAGATGATGATTATGTGTTAGAGTTTTTTCTGCCTCCTGGGATCACAGAATTTCATGAACAGAAGACGCTCTTGGGATCCATATTGGCAACAATGAAAGAAcattttcagagtcttaacatTGCTTCTGGTGTTGAACTTGAGGAAAATGGTTCAATTGAAATTATTGAAGCAACAGATGAAGGCATTCGTCTTAGAACTGAATATATTCCAATTGCTCAATCTATTAAATCACCACTTATACCTGATGCCTCACCAAATATGGAGGAGGTACCACAGGATAATCCATCAGGGATTCATGGTGAAGACGTAGGTGGAAGCATCGATCCGATGTCCTCCTTagcaaataaaaacataaagaaacCGTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGGTATTTCGCCGGGAGTCTTAAAGATGCTGCAAAAAGCCTTGGCGTTTGCCCTACTACAATGAAGCGCATATGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGcgtttgatttgaattccctcgGTAATAATCAACTTCCAATTGTTAGTTCTTTTCCTGAGCCTTCTACTCCGAATAAGTCCAACCAGCAAGGCTCGTTAAGCATTAAGCCATCAGAGCCTCAGATGAAAGAGAATGAGTTTGACGCCTCTAAAGCATCAGAAACAAACATACATGTTGTAATGGAAGATCAATTACTAGGAGGAAGGAAACATAGTCTTGATAAAGAAGTGATTAATGATAAAGGTGTGTCTATTCAGGAAATTGGGAAGGACCGAAAAAGAACTAGAACTAGGAGTGGCTCGAGCGAAGATAGCACAAATCCTGCTTCTCATGGTTCATGCCATGGTAGTCCACCAAATGAAATGTCAAATGTAAAAGATCTATTCATTCCATCCAACAATGAGCAATGTGTTGTGTTGAGGGGATCACCAGAATCAAGAGTGCAGCCAACTAATGCATTCAACTCTCCAACTGCTCACTGTTTGCCTGACAACGTGCTAGCAGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGAGGACGCTGGAAGTTCGAAAGACTTAAGAAATTTGTGTCCTTCGGTAGCTGAGGCAATTTTGGAAGATATGGCTCCAGAAGCTTGTGGAACTAATCTTCCAGGTTCATATATGGCTCCTCCTAAACAATGCATGgatactattaataataataattcagtGATGCCTTTCGCAGTTAGAAAAGAAATGAAAACCGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGATTTAGGGTCTCTTTGAACTGTGGCATTgtggaattgaaagaagaagtTTCCAAAAGATTGAAACTAGAGGTTGGTACATTTGATATCAAGTACatggatgatgataatgaatGGGTTTTAATAGCATGTGATGCAGACCTTCAGGAGTGCTTGTATGTTTCAAGATCATCCGGAGGAAGCAACATAATCCGGGTTTTGGTGCATGACATAACGTCGAATCTTGGAAGCTCTTGTGAGAGCTCAGGGGAGTGA 2070 0.3928 MLLNQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEVASYIIDAHLWGFREACVEHHLQHGQGVAGRAFLSQNMSFCSNITQFCKTDYPLVHYALMFGLTGCFAICLRSLYTGDDDYVLEFFLPPGITEFHEQKTLLGSILATMKEHFQSLNIASGVELEENGSIEIIEATDEGIRLRTEYIPIAQSIKSPLIPDASPNMEEVPQDNPSGIHGEDVGGSIDPMSSLANKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFDLNSLGNNQLPIVSSFPEPSTPNKSNQQGSLSIKPSEPQMKENEFDASKASETNIHVVMEDQLLGGRKHSLDKEVINDKGVSIQEIGKDRKRTRTRSGSSEDSTNPASHGSCHGSPPNEMSNVKDLFIPSNNEQCVVLRGSPESRVQPTNAFNSPTAHCLPDNVLAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDMAPEACGTNLPGSYMAPPKQCMDTINNNNSVMPFAVRKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVSKRLKLEVGTFDIKYMDDDNEWVLIACDADLQECLYVSRSSGGSNIIRVLVHDITSNLGSSCESSGE 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04404 689 MobiDBLite consensus disorder prediction 433 473 - -
Tsu01g04404 689 Pfam RWP-RK domain 282 330 IPR003035 -
Tsu01g04404 689 MobiDBLite consensus disorder prediction 433 449 - -
Tsu01g04404 689 ProSiteProfiles RWP-RK domain profile. 269 350 IPR003035 -
Tsu01g04404 689 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 688 - -
Tsu01g04404 689 SUPERFAMILY CAD & PB1 domains 591 679 - -
Tsu01g04404 689 ProSiteProfiles PB1 domain profile. 593 676 IPR000270 GO:0005515
Tsu01g04404 689 MobiDBLite consensus disorder prediction 362 388 - -
Tsu01g04404 689 Gene3D - 590 673 - -
Tsu01g04404 689 PANTHER PROTEIN NLP8 5 688 IPR045012 GO:0003700
Tsu01g04404 689 SMART PB1_new 593 676 IPR000270 GO:0005515
Tsu01g04404 689 Pfam PB1 domain 593 675 IPR000270 GO:0005515
Tsu01g04404 689 MobiDBLite consensus disorder prediction 450 473 - -
Tsu01g04404 689 CDD PB1_NLP 594 675 IPR034891 -
Tsu01g04404 689 MobiDBLite consensus disorder prediction 362 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04404 Tsu-Chr1 51841610 51846117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04404 5 689 NLP Transcription Factor Family AT4G24020 52.408 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu01g04404 PB1 1.5e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04404 - - gmx:100786118 1041.18