Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04400 ATGGGAGCAGCTGCTGACAGATATAAGACGAGGTTAGATAGTGAAGCTGAAGACACGCCTGGAATAGAGACTACCCCTGTTTTGTTGATGCTCGACTCAAATACAGAAGCCAAACAATCTGAAAAAGTTAAATCAGAATTAATTCCTAATGTATTGAAATATTTAGATTCTAGTGATATGGAAGATACTGAAAACGTTATTGCAAGGACAAAGTTGACAGATTTGCTTATTCATGAGGACGATGAAGCATTACAAAACTGGCGTGCTAAGGAGATAAGTAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGACGTACTAGAAATGAAGAATCAGCGAGataaaataatatgtgaatTGCAAATGGTCCGAGACCAAAGTTCAGCTCTTAAAAACCAATTGTTTGAGTCCAAGTGTACGGCAACCGAGTTGGAAGAGAAGTTTCTATCTGCTGTGGACCTTTTGATAAGTTTCAAGGAAAGACGAGATAAGCTAAGGATAGAACATGCAAATGCAGTTAGGAAAGTCGAAGTGCTGGCAAAAATTGGAGAAGCGGATACTACATCCTCTTATGTGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCttggaaaattggagagggaagGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCTTGTTGCCATAAAAATGCTACCCTCTTATGGTTGCCAGAGCCTATTGGAGTTCCAGCATCAGGTAGAGGTTTTAAGTAGAGTAAGACATCCAAATCTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAAGTCACTTGTGTATGAATACCTAAACAATGGTAGCCTCGCAAGCCATCTTGCCTGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATATCTATTGCTACTAACATATGCTCTGCTCTTATCTTCCTCCACTCTAGTGACCCTTGTATTATCCATGGGAATTTGAAGCCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCGAAACTTGGTGACTTAGGGATTACTTCTTTAGTCCAGCATAGTGTGGATTCAACTGACACAAGCCCAGTCTTATGTAACAATTCTCATGAAAATTTGGCATATGTGGATCCTGAGTATCTTGACACTGGTAAACTTAGACCAGAATCAGATGTGTATTCATTTGGAATCATACTGTTACAACTTTTAACTGGAAGACCACTTTCGGGGCTAGTTAGAGATATGAGATGTGcattggaaaaagaaaatattaaaactgTGTTGGACTTGTCAGCTGGTGAATGGCCACTTTATCAAACCACACAACTGGCATATTTAGCATTGAGGTGTTGTGAGAAGACTTGGTTGAACCGGCCAGATCTTGTGTCAGAAGTCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCATAGACAGGAGACAAGAGTTGACTTCTAAGAAGCATCAACGAGCTCCTTCTCATTTTGTCTGTCCCATTGTCCAGGAAGTTATGGAAGATCCATACATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGAGGATGGTTGGACAGTGGTCACGACACTTCCCCTATGACAAACCTCACACTTGAACACACAGATTTGGTACCTAATTATGCACTACATAATGCCATTCGGGAGTGGCAGCAACAATGA 1701 0.3933 MGAAADRYKTRLDSEAEDTPGIETTPVLLMLDSNTEAKQSEKVKSELIPNVLKYLDSSDMEDTENVIARTKLTDLLIHEDDEALQNWRAKEISRRKEVEEQLAREKQDVLEMKNQRDKIICELQMVRDQSSALKNQLFESKCTATELEEKFLSAVDLLISFKERRDKLRIEHANAVRKVEVLAKIGEADTTSSYVVEFPAFSFMEINEATHDFDQSWKIGEGRYGSVYKGLLRNMLVAIKMLPSYGCQSLLEFQHQVEVLSRVRHPNLLTLIGSCAESKSLVYEYLNNGSLASHLACKDKTPLPWQIRISIATNICSALIFLHSSDPCIIHGNLKPSKVLLDANFVAKLGDLGITSLVQHSVDSTDTSPVLCNNSHENLAYVDPEYLDTGKLRPESDVYSFGIILLQLLTGRPLSGLVRDMRCALEKENIKTVLDLSAGEWPLYQTTQLAYLALRCCEKTWLNRPDLVSEVWSVLKPFRTICIDRRQELTSKKHQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHDTSPMTNLTLEHTDLVPNYALHNAIREWQQQ 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04400 566 ProSitePatterns Protein kinases ATP-binding region signature. 219 240 IPR017441 GO:0005524
Tsu01g04400 566 Pfam Protein tyrosine and serine/threonine kinase 218 467 IPR001245 GO:0004672|GO:0006468
Tsu01g04400 566 SUPERFAMILY Protein kinase-like (PK-like) 189 467 IPR011009 -
Tsu01g04400 566 Pfam U-box domain 497 565 IPR003613 GO:0004842|GO:0016567
Tsu01g04400 566 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 32 565 - -
Tsu01g04400 566 Gene3D Transferase(Phosphotransferase) domain 1 286 481 - -
Tsu01g04400 566 CDD RING-Ubox_WDSUB1_like 501 542 - -
Tsu01g04400 566 SUPERFAMILY RING/U-box 495 566 - -
Tsu01g04400 566 ProSiteProfiles Protein kinase domain profile. 213 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04400 566 Coils Coil 88 115 - -
Tsu01g04400 566 PANTHER OS02G0152300 PROTEIN 32 565 - -
Tsu01g04400 566 ProSiteProfiles U-box domain profile. 496 566 IPR003613 GO:0004842|GO:0016567
Tsu01g04400 566 SMART Ubox_2 500 563 IPR003613 GO:0004842|GO:0016567
Tsu01g04400 566 Gene3D Phosphorylase Kinase; domain 1 184 285 - -
Tsu01g04400 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 566 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04400 Tsu-Chr1 51813040 51818170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04400 115 566 U-box Gene Family AT3G49060 51.724 2.05e-161 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu01g04400 PK_Tyr_Ser-Thr 4.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04400 - - mtr:MTR_1g100820 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04400 01 51813040 51818170 Tsu01g04400 01 51813040 51818170 ECH