Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04398 ATGCCAGTTGCAAAACTTACTGCTTCAGGTACTCCCAATTTTATGAAAACAGAAGACGGAAATGATTCTTTGGATACATTAATCAGACAAGCAGTTGGAAAAGAACCTTTCCTTTCGATTCCTAGGGCTGGTGAAAGGCCGGCACAGTGGATTCAATTATTTCATGCTTTAGAACAGCAACAAGAAATTCCAGGGTGGCCTTTGTTCTCTCCTGCAAAGGTTCAGTTATATAAGTGCGACAAGTGTACCAAAGAGTTTTGCTCACCCATTAATTATAGAAGACATAAACGTGTATACCATCGGTTGAAAAAGCTtgataagGACTCTAAGAAAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCTATAGAAGAGGCAAAGGAAGCTGTGTCATTTGAGAATGTGACACTCGAGGAGGTTCCAGGGTCTTCAATTTTACAAGCTCTCTCAACTCTTAGAACACAACAAGGATTCTATTCTCTTCCACATAATTATCTCAGAGCTGGATTTTCCCTTTTGGATATTGTTCAATCCAGGCCTTCTAGTTTCCCTATATCTTCCCAGAAGTTGTTCGATATTCTTGATGATTCCAgtgaaaaaacatttttatgtGGAACAGCAGTGTCAATGCAAAGACATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTGAAGGCGTGGCTTGCAGACAAAGATGCTGAAGCATTGAGATGCCAGAAGCTGCTGATGGAGGAGGAGGAAGCTGCTCAGAAAAGAAAAGCTGAAATTTTGGAGAGAAAACGCAAGAAAAAGCTTAGGCAGAAGGCGAGGAGCCGACTTGAAAATGACACAGAAATTAAAGGGAGCATCAGCAGCACAGGAGAGGATGTATCACCAGAGGAAGGATCTTCGGCTGCATGTGACTTTGAAGCACAAAGAGAAGATGCATTTGCAGATCATGCTTCTTCACCACATGTAACTTATCACTTTCTAGACACCAATGAATGTGTCGATGGGGATACACATTCCGGCTACGACTGTGACACTGATCAGAACATGGAGCCACAAACATCAGAAAGGGATGCACAGTCAGGTTATGATTGTGACACTGATCGGAATGTAGAAAGACAGACATCACACAGACATAATCCTCGGCGCACAATGGCTGCTAGACGGCAAGGGCTTCCTAAGTCACAACGAACTATTGCCAATGGTTTGTATGCAAGCCAGAACTCTCAAAAGTCAAAGTTTGGAGTCATTCCAAAATATGGAAATGGAACAAACCGTGATCAAAGGGCAGCTCCTATAGTTAATGGTGGTAAAGTTTGGAGCCGGAAACCTAAACCAGAATCAGATGCAGTGGTTTTAAAAACCAGAATGCACAAAGAACCAGCCAAATTTAAGAATCATGAGGTTTTGATAGGATCTGTATCGGTTACACTGGCCAATTGCAGCCAATCAGAGTGTTATCCTGTCACATCTCAAGAGGACAGTTTAGTAGAGAATTTGGCCGACCAAAATGTTGCTCAGGAGAAGCCAATTAAAACTGACTCCTTTCACGGAGGCAACAATCGGTCAAGGGTTAAGCTTTGGAGACCAGTTAGCCAGCACGGAACtaaaaatccaatgccacttgaaAGTGTTGGGACAGAAGTTGATGTAGTCTATGGAAAAGATGATCAAAATTTGTCAGTTCAAAGTAGTTTAAGGTTGTGTAATATAGATGGAGGTGATATTGGTTCTGGGAACAAATCCCATGTCCATGTTGCAAAAGCCTTTCTTGCACAAAGATGGAAGGAAGCAATTTCATCACATCATGTGGAGTTGGTAATTTCACCTGATTCTGAACCTCCCGGGTTCCAGCCAGTCCAGGATTGCGACCTAGCATCATGTCGATCTTCTAATACTGAGAGATGTAGCATTCTTGCAAATACAGAGAACTTGTTGCCTGCAAATACCGGAGTTGCTAAATCCAAACCCAGAGTAAAGCCCGAGAAGGGAATCAAGATAAAGTACATTCCAAAACTAAAAGCTGCAGCATAA 2082 0.414 MPVAKLTASGTPNFMKTEDGNDSLDTLIRQAVGKEPFLSIPRAGERPAQWIQLFHALEQQQEIPGWPLFSPAKVQLYKCDKCTKEFCSPINYRRHKRVYHRLKKLDKDSKKNRDLLGAYWDKLSIEEAKEAVSFENVTLEEVPGSSILQALSTLRTQQGFYSLPHNYLRAGFSLLDIVQSRPSSFPISSQKLFDILDDSSEKTFLCGTAVSMQRHVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLMEEEEAAQKRKAEILERKRKKKLRQKARSRLENDTEIKGSISSTGEDVSPEEGSSAACDFEAQREDAFADHASSPHVTYHFLDTNECVDGDTHSGYDCDTDQNMEPQTSERDAQSGYDCDTDRNVERQTSHRHNPRRTMAARRQGLPKSQRTIANGLYASQNSQKSKFGVIPKYGNGTNRDQRAAPIVNGGKVWSRKPKPESDAVVLKTRMHKEPAKFKNHEVLIGSVSVTLANCSQSECYPVTSQEDSLVENLADQNVAQEKPIKTDSFHGGNNRSRVKLWRPVSQHGTKNPMPLESVGTEVDVVYGKDDQNLSVQSSLRLCNIDGGDIGSGNKSHVHVAKAFLAQRWKEAISSHHVELVISPDSEPPGFQPVQDCDLASCRSSNTERCSILANTENLLPANTGVAKSKPRVKPEKGIKIKYIPKLKAAA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04398 693 MobiDBLite consensus disorder prediction 298 312 - -
Tsu01g04398 693 MobiDBLite consensus disorder prediction 377 395 - -
Tsu01g04398 693 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 105 IPR013087 -
Tsu01g04398 693 MobiDBLite consensus disorder prediction 285 318 - -
Tsu01g04398 693 ProSitePatterns Zinc finger C2H2 type domain signature. 79 100 IPR013087 -
Tsu01g04398 693 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g04398 693 Coils Coil 260 294 - -
Tsu01g04398 693 MobiDBLite consensus disorder prediction 361 376 - -
Tsu01g04398 693 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 691 - -
Tsu01g04398 693 MobiDBLite consensus disorder prediction 360 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04398 Tsu-Chr1 51805091 51810255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04398 18 688 C2H2 Transcription Factor Family AT4G25610 41.471 5.88e-139 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g04398 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04398 - - cam:101491132 1047.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04398 01 51805091 51810255 Tsu01g04398 01 51805091 51810255 ECH
Tsu06g03150 06 41827065 41837916 Tsu01g04398 01 51805091 51810255 PCT