Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04394 atgcCTACATGGTGGGGAAAATCATCGTCAAAAGAAACCAAGAAGAAAGCGGGTAAGGAAAGTATTATTGATACATTGCACCGAAAATTTAAATTTCCATCTGAGGGTAAACTAAGCAGTATATCCGGAGGATCTCGTAGACGATGCAATGACACAATTTCAGAGAAGGGGGATCATTCTCCATCTGAAACAAGATCTCCTTCACCTTCCAAAGTAGCAAGGTGTCAAAGTTTTGCAGAAAGACCGCATGCACAACCACTTCCACTTCCTGGTCTGCACCCTTCAAGTGTAGGTCGAGTAGATTCTGAAATTAGTATATCAGCGAAATCGAGAGTGGAAAAGTCCTCTAAGCCATCATTGTTTCTTCCTCTTCCGAGACCTTCATGCATACGTTGTGGGCCAAATCCTGCAGATTTGGATGCAGATATGGTCAATGCTTCAGTCTTCAGTGATTGCTCTGCTGATAGTGATGAGCCAGCAGACTCACGCAATCGTAGTCCTCTCGCAACTGACTCTGAAACTGGGACTAGAACTGCTGCCGGTAGTCCTTCCAGCTTGATGCTCAAGGATCAACCGTCTGCTGTTTCACAAGTGAATTCGAGAGAAGTCAAAAAATCGGCTAACATTCTAAGTAATCATACACCTTCTACTTCACCAAAACGGAGGCCATTACGCCACCATGTTCCAAATCTTCAGGTTCCTCCTCATGGTATCTTCTATAGTGGTCCTGACAGTTCCTTGTCAAGTCCATCAAGGAGTCCATTGAGGGCATTTGGTACAGATCAGGTGTTGAACTCCGCTTTTTGGGCCGGGAAGCCATATCCAGAGGTCAATTTCATTGGATCTGGACACTGTTCTAGTCCAGGTTCTGGTCACAATTCAGGGCATAATTCAATGGGAGGGGACATGTCGGGACCATTATTTTGGCAACCAAGCAGGGGTAGCCCTGAGTATTCTCCGGTACCTAGTCCTAGAATGACTAGCCCTGGTCCAAGCTCAAGAATTCAGAGTGGAGCAGTCACACCTATTCATCCTAGAGCTGCGGGAACACCGACTGAATCACAGACAGGACGGCTTGATGATGGAAAACAACAGAGTCATCGTTTGCCCCTCCCTCCTATAACAGTTAACAATACCTCGCCATTCTCTCATTCTAATTCTGCAGCAACATCTCCATCTATGCCAAGAAGTCCAGCTAGAGCAGATAGTCCAATGAGCTCTGGGTCACGTTGGAAGAAAGGAAAGCTGCTTGGCAGAGGCACATTTGGACACGTCTATATTGGCTTCAATAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACTATGTTTTCCGATGATGCTAAGTCTATGGAAAGTGCTAAGCAATTAATGCAGGAAATTCATTTATTGAGCCGTTTAAGGCATCCAAATATTGTGCAGTATTATGGTTCTGAAACAGTAGATGACAAGCTTTACATATACCTTGAGTATGTATCTGGGGGCTCCATTCATAAACTTCTTCAAGAATATGGGCAATTTGGCGAACTAGCTATTCGAAGTTATACTCAACAAATTTTGTCAGGGCTTGCTTTTTTACATGCTAAAAATACCCTTCACAGGGACATAAAAGGAGCAAACATACTAGTAGATCCAAATGGTCGGGTGAAGGTTGCAGACTTTGGCATGGCAAAACATATAACAGGGCAATACTGTCCATTGTCATTCAAAGGAAGTCCTTATTGGATGGCTCCTGAGGTTCTACTTTTATTTCTTAGTGTTATGTTCTTTAGATTTTAA 1782 0.4355 MPTWWGKSSSKETKKKAGKESIIDTLHRKFKFPSEGKLSSISGGSRRRCNDTISEKGDHSPSETRSPSPSKVARCQSFAERPHAQPLPLPGLHPSSVGRVDSEISISAKSRVEKSSKPSLFLPLPRPSCIRCGPNPADLDADMVNASVFSDCSADSDEPADSRNRSPLATDSETGTRTAAGSPSSLMLKDQPSAVSQVNSREVKKSANILSNHTPSTSPKRRPLRHHVPNLQVPPHGIFYSGPDSSLSSPSRSPLRAFGTDQVLNSAFWAGKPYPEVNFIGSGHCSSPGSGHNSGHNSMGGDMSGPLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAAGTPTESQTGRLDDGKQQSHRLPLPPITVNNTSPFSHSNSAATSPSMPRSPARADSPMSSGSRWKKGKLLGRGTFGHVYIGFNSESGEMCAMKEVTMFSDDAKSMESAKQLMQEIHLLSRLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLQEYGQFGELAIRSYTQQILSGLAFLHAKNTLHRDIKGANILVDPNGRVKVADFGMAKHITGQYCPLSFKGSPYWMAPEVLLLFLSVMFFRF 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04394 593 MobiDBLite consensus disorder prediction 286 412 - -
Tsu01g04394 593 MobiDBLite consensus disorder prediction 34 127 - -
Tsu01g04394 593 MobiDBLite consensus disorder prediction 165 218 - -
Tsu01g04394 593 MobiDBLite consensus disorder prediction 286 300 - -
Tsu01g04394 593 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g04394 593 SUPERFAMILY Protein kinase-like (PK-like) 398 583 IPR011009 -
Tsu01g04394 593 Pfam Protein kinase domain 412 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04394 593 ProSiteProfiles Protein kinase domain profile. 411 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04394 593 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 581 - -
Tsu01g04394 593 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Tsu01g04394 593 MobiDBLite consensus disorder prediction 370 404 - -
Tsu01g04394 593 Gene3D Transferase(Phosphotransferase) domain 1 408 586 - -
Tsu01g04394 593 MobiDBLite consensus disorder prediction 151 229 - -
Tsu01g04394 593 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 581 - -
Tsu01g04394 593 SMART serkin_6 411 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04394 Tsu-Chr1 51779112 51783693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04394 4 582 MAP Kinase Kinase Kinase AT1G63700 64.028 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tsu01g04394 Pkinase 5.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04394 K20717 - gmx:100782929 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04394 01 51779112 51783693 Tsu01g04394 01 51779112 51783693 ECH