Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04387 ATGTCTTCACCGGGTTTCACCGGCGGTGGTGGTTCCTCTGATTTGTACGGCGGAGCAGCTAGTTTTTCTGGTAGATCTATTACACTTCCATCATCCAACATGAACAACAAcatgatcaacaacaacaacatcaacaataacaattaTCTCTCAAACATAGCCAACACCAACACACACAACAACCTTAATCATCATTTCTACCGAACCCAACAACAACAGCTTCCATCGATTTTCATCGATCCTTCTACACAAATCGCACAAAGACAAACATCTTCCCTCATCGGGAAACGTACCCTTGCTGAATTTCAAACCCAAAacttcaacaacatcaacaacaacaaccttaaTCTTCACAATTTCAATAATAATCTAAACCACAACCTTAaccataacaacaacaacaacaatactGTTCTTTCAAACCTTTTACTTCGTTCTGTGAAACCTAGGAATTTCCAACATGGTTCTCCTATGTCACCTCTTTCTCCAATTGATTTCTCAAATTCCTCACCTGAATTCATCaacccttctttttcttcacctCGTTTAGGTTTACCGCTTCGATCAATATCAAACCCTATTGTTCAAAACCCATTACCCATGAACAATTCAATTCTGCAAAACACCaattttctttatcaaaattctaatttttcgCAGATTCAGAACAGGGTGATTCCAACTAGCCATGACCCGCCTAAGAAAATGATGGATCATCGTTTTCTTGAGTTGGAAAAACAGCTTCTTGAAGACAATGATGAAGAAGGAGAACAAGATGCAGTTTCTGGGATTACAAACAGTGAATGGTCTGAAACAATTCAGAATTTGATTAGTTTCGAGAAAAACCCGACCCAGAAACCCGATTCATACTCAcccacttcttcaacaacatcaCTGAACTCATGTTCTTCATCTGTTGTTTCTCCTGCTTCTGGTTGTTCAAAGCAATTGTTAATGGAAGCTGCAACCGCAATTTCTGAAGGTAAAATGGAATCTGCTTCGGAGATCCTTAATCGTATGGCTCAGAATTTGAACCCAATAGTGAATTCTGATCGTCGATTAATGGATTGCATGGTTTCAGCGTTGAAATCACGCGTGAATCATGTTGAAAATCCACCTCCAGTAATGGAACTTTTTAGCAAGGAACACGCTGAGTCAACTCAGCTTCTCTTTGATCATTCTCTTTGCTTTAAGGTCTCTCTCATGGCTGCAAACATCGCAATCCTTGAAGCAGCATTCGAAGAAACAACAGAGAAAGataacaacaacagcaacaacgTGATGAAGCTATGTGTGGTGGATTTTGATATTGGTCATGGAAAACAATACATGTCTCTTCTCAATGAACTCCACGCGCGTCTCAATGGTTCACCAGCGACGTTGAAGATCACAGCGGTGGCGGAGAACGACGAAGAAGAAAGGCTGAAGACGGTGGGAGAAAATTTGGGTCGACAAGCGGAGCGTTTAAGAATCGGTTTTGAATTCAAAGTGGTAACACAAAAACTTGCTGAGTTAACTCGCGAGTCATTAGGTTGTGACTCGGAGGATATTCTTGCTGTGAATTTCGCGTTCAAGCTGTTCAGAATGCCAGACGAAAGTGTGTCAACGGAGAATCCACGCGACGCGCTTCTTAGGAGCGTGAAATCACTCGCGCCTCGTGTTGTTATTGTTTCGGAGCAAGAAATTAATACCAATACGGCACCGTTTGTTGCACGTGTGGCTGAGTCGTGTTCATATTACGGCGCGCTGTTTGATTCAATTGAGTCAACTATGGGGAAGGATAACTCGGAGCGAGTTAAGATTGAGGAAGGACTGAGCCAGAAACTGTGTAACGCGGTTGCTTGTGAAGGGAGAGATCGTGTGGAGCGTTGTGAAGTGTTTGGGAAGTGGCGTGCACGCATGAGTATGGCTGGGTTTAGGTTAAACCCAGTGAGTCAGAAAGTGGCTGAGTCAATTAAAGCGCGGCTCGCGCCGGGAAGCCGAGTCACTGTGAATGAAGAAAACGGTGGCGTTTGCTTTGGTTGGATGGGAAGAACTCTCACCGTTGCATCTGCTTGGCGTTAA 2064 0.3992 MSSPGFTGGGGSSDLYGGAASFSGRSITLPSSNMNNNMINNNNINNNNYLSNIANTNTHNNLNHHFYRTQQQQLPSIFIDPSTQIAQRQTSSLIGKRTLAEFQTQNFNNINNNNLNLHNFNNNLNHNLNHNNNNNNTVLSNLLLRSVKPRNFQHGSPMSPLSPIDFSNSSPEFINPSFSSPRLGLPLRSISNPIVQNPLPMNNSILQNTNFLYQNSNFSQIQNRVIPTSHDPPKKMMDHRFLELEKQLLEDNDEEGEQDAVSGITNSEWSETIQNLISFEKNPTQKPDSYSPTSSTTSLNSCSSSVVSPASGCSKQLLMEAATAISEGKMESASEILNRMAQNLNPIVNSDRRLMDCMVSALKSRVNHVENPPPVMELFSKEHAESTQLLFDHSLCFKVSLMAANIAILEAAFEETTEKDNNNSNNVMKLCVVDFDIGHGKQYMSLLNELHARLNGSPATLKITAVAENDEEERLKTVGENLGRQAERLRIGFEFKVVTQKLAELTRESLGCDSEDILAVNFAFKLFRMPDESVSTENPRDALLRSVKSLAPRVVIVSEQEINTNTAPFVARVAESCSYYGALFDSIESTMGKDNSERVKIEEGLSQKLCNAVACEGRDRVERCEVFGKWRARMSMAGFRLNPVSQKVAESIKARLAPGSRVTVNEENGGVCFGWMGRTLTVASAWR 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04387 687 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 88 686 IPR005202 -
Tsu01g04387 687 PANTHER SCARECROW-LIKE PROTEIN 8 88 686 IPR030013 -
Tsu01g04387 687 Pfam GRAS domain family 315 687 IPR005202 -
Tsu01g04387 687 MobiDBLite consensus disorder prediction 281 302 - -
Tsu01g04387 687 ProSiteProfiles GRAS family profile. 305 687 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04387 Tsu-Chr1 51717471 51719864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04387 69 687 GRAS Transcription Factor Family AT5G52510 47.295 2.16e-153 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu01g04387 GRAS 4e-96 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04387 - - aip:107644872 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02921 06 38446407 38448533 Tsu01g04387 01 51717471 51719864 PCT