Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04377 ATGGCTGCAGAATTTTCCACCACCACAACCTTAAAACCCCACATTCTCCTCCAAACCTTAACTTCCCCTAAAACAACCTCAACACAGTTGTTCTTCAACCCTTTAAGAGGCTTCCCTCATAGCAAAATCAGTCAGACACAAACAAGAACTAAGAAGCGTTTCACTGTTTGTGTTATCACAGAGAATCCAAAAAACAGCATCCAAATCAAAACAGAGGAAAAATCAGAACCTCCCATTAATAAACCCGATCCTCATTTTTTAGTTGCACAAAAATTGGCTAGAAAGGAGTCACAGAGGCTTACTTACCTTGTTGCTGCTATAATGTCTAGCTCTGGTGTTACTTCTATGGCAATTTTAGCTGTTTATTATCGATTCTCATGGCAAATGGAGggTAGTGGAGAGGTTCCATGGGCTGAACTGTTTGGTACATTTGCCCTCTCAGTGGGTGCTGCTGTGGGTATGGAGTTTTGGGCAAGATGGGCTCATAGGGCTCTATGGCATGCTTCATTGTGGCATATGCACGAGTCACACCATCGACCAAGAGAAGGTCCATTTGAGCTTAATGATGTTTTTGCAATAATTAATGCTGTTCCTGCAATTGCACTTCTCTCATTTGGTTTTTTTAACAAGGGATTGCTTCCTGGACTCTGTTTTGGTGCTGGTCTTGGAATTACTTTGTTTGGGATTGCTTACATGTTTGTCCATGATGGTTTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAGTGTGCCCTATTTAACAAGAGTTGCTGCTGCTCACCAActcCACCATTCGGGCAAATTCGACGGGGTGCCATATGGGCTCTTTTTAGGACCACAGGAAGTTGAAGAAGTGGGAGGGCTGGAAGAGCTAGAGAAAGAGATAAGTAGAAGAACAAGATCATATACTAGCTCATGA 921 0.4267 MAAEFSTTTTLKPHILLQTLTSPKTTSTQLFFNPLRGFPHSKISQTQTRTKKRFTVCVITENPKNSIQIKTEEKSEPPINKPDPHFLVAQKLARKESQRLTYLVAAIMSSSGVTSMAILAVYYRFSWQMEGSGEVPWAELFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFNKGLLPGLCFGAGLGITLFGIAYMFVHDGLVHKRFPVGPIASVPYLTRVAAAHQLHHSGKFDGVPYGLFLGPQEVEEVGGLEELEKEISRRTRSYTSS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04377 306 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 1 303 IPR045019 GO:0016491
Tsu01g04377 306 Pfam Fatty acid hydroxylase 150 277 IPR006694 GO:0005506|GO:0008610|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04377 Tsu-Chr1 51614758 51617885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04377 1 220 Chloroplast and Mitochondria Gene Families AT4G25700 59.111 2.25e-86 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04377 K15746 - gmx:100802778 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04377 01 51614758 51617885 Tsu06g02933 06 38585043 38587100 ECH
Tsu01g04377 01 51614758 51617885 Tsu01g04377 01 51614758 51617885 ECH
Tsu06g02933 06 38585043 38587100 Tsu01g04377 01 51614758 51617885 PCT