Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04367 ATGAAGATCCCCCAACGAAACAACAAGTCTTCTTCTAGAGTTCTTCGCTACGATCCATATGCATTGGCGTTTCTTAAGGCGATACAAGTTACATTTAAAGATAAGAAGGAAAATCATAATGAGATTGTGAAACTCCTAAAAGATTTCAAGGCTAGAGGTAATTCCTCAACAAAAAGAATGAAGGAGTTGCTTAAAGGacatacaaatttaattttgttattcaacACCTTCATGCCAAAGGAACGTCGAATCACACTTTCATCTCAACTTGAGACCAAAGGGAGAAAGGTGAACAAGGTAGAAGAGAATTGTGAGCTTCCGTGCGATGTGCTTGATatcattatcaaaaaattagattttgatGATCTCTTTCAGTTTGCCGGTGTGTCCAGGAATTGGAGGGcttttcataaaatttactgGACAAATTTCTTGGCATCCCAAAAGCCATTAATTTCTCAGTTTTCGATGGGTTGTCTTAAAAGATTCTTTTCCTTTATTAGCATACCCGAGCAAAAAGTTTATTGCTTCAAGATGAAGTACTCTGGCTCCTATGTTATGTTTTCTAGCGGATATTTTATCATGATGCGTGGTGGTCATTCATTTATGCTAATCAATCCGTTTACAAGAACAATGAAGGTAATTCCCTCTGAAGTTAAAGGTTATCTTACACTTAAGTGTGCCCTACTTGCTTTTGACAAATGCTCCGAGGAATTTGTCTTGGTGGTTTTATGTGGTTCTCATTTGAATGTTTATCAATCTCGAAATTGTGGTTGGGTTATTTATCCAATAAGGGAAAATCTAGGGCGTATTGTTGACGCTGTGGttttacataatataatatatgtaaTCACTAATAGGGCTAAAATAGGGGTACTCAACTTGAATTCTTCAAAtattaaatatctaaaattGAAGAGTACTCCTAATGTAATTGCCTCAAACCTTAACTTGGTTAATTGCGATGAGCAACTTTTAGTGGTTGATTTCAAGTCCAAGAGCATAAAGAATGTGTACAAGATAGACTTCTCAACCATGAATTATGTCAAACTTGAGACTTTGGGTGACATTGCATTATTTCATGCTTGGAATCCTTTCAAGAGTAAATGTTATGCATTGAGCAACCCAAATCGGTGGGGATATGAGAGCAACTCTATGTATGTACTCAATAAGGATTCTACAATATGTAGTGTGTATACAATGGAcgataaaaaattgcaaaaatgcATTACGCTTCCGGCTCCTAGTGGAACAAGTTTCAGCGAGCTTGATTGGTGTTTTAGACATCTAAGATATGAGGTAGATTATTCTCTAGTTGAATAA 1323 0.3409 MKIPQRNNKSSSRVLRYDPYALAFLKAIQVTFKDKKENHNEIVKLLKDFKARGNSSTKRMKELLKGHTNLILLFNTFMPKERRITLSSQLETKGRKVNKVEENCELPCDVLDIIIKKLDFDDLFQFAGVSRNWRAFHKIYWTNFLASQKPLISQFSMGCLKRFFSFISIPEQKVYCFKMKYSGSYVMFSSGYFIMMRGGHSFMLINPFTRTMKVIPSEVKGYLTLKCALLAFDKCSEEFVLVVLCGSHLNVYQSRNCGWVIYPIRENLGRIVDAVVLHNIIYVITNRAKIGVLNLNSSNIKYLKLKSTPNVIASNLNLVNCDEQLLVVDFKSKSIKNVYKIDFSTMNYVKLETLGDIALFHAWNPFKSKCYALSNPNRWGYESNSMYVLNKDSTICSVYTMDDKKLQKCITLPAPSGTSFSELDWCFRHLRYEVDYSLVE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04367 440 PANTHER OS06G0113600 PROTEIN 96 435 - -
Tsu01g04367 440 PANTHER OS06G0113600 PROTEIN 96 435 - -
Tsu01g04367 440 Gene3D Paired amphipathic helix 21 79 IPR036600 GO:0006355
Tsu01g04367 440 SUPERFAMILY F-box domain 104 152 IPR036047 GO:0005515
Tsu01g04367 440 Pfam F-box domain 105 135 IPR001810 GO:0005515
Tsu01g04367 440 ProSiteProfiles F-box domain profile. 100 144 IPR001810 GO:0005515
Tsu01g04367 440 ProSiteProfiles PAH domain profile. 13 81 IPR003822 GO:0006355
Tsu01g04367 440 SUPERFAMILY PAH2 domain 20 80 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04367 Tsu-Chr1 51543912 51545234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04367 21 86 WRKY Transcription Factor Family AT4G12020 39.130 3.46e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04367 - K11644 mtr:MTR_7g083950 461.84