Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04366 atggcTGAAGATTGGGATCTTTTTGCCATTGTTAGAAGTTGCCAATCAACCACCAATACTAACACAACTACAACCACAATCAATAGTACTATACCATCTTCCATTAATTCCACTTCTAATTTGAAGGTAGAATTAGAATATGATGCATTTTCTTTTCCTAATATAGTGCAACCTATAACCAATGAGGTTCAAGGGTTAAACCAATTATTCACATCTTTTAACCCCACTACCAACCCAAACACCACTATTACCACTAGTGGTTATGGTATCAATCCCAATTCCCCTAATATTGCAAGATGCATTGGACAACAACATCACAATATTGCTCCTACTACTTCCTCTTCCATTTGGCCTAATTTTGTACAAGAAGCTTCCACTTCTAGCTTCAACAAATTCCATAACCAACAATTACAACAACAGAAACATCAACTACAAGAATTCCATGTACCTCAAAGCATCCAACCTCAAACACCAAGATCAAGGAAAAGAAAAAGTCAACAAGGGAAAATGGTGTGCCGTGTAACTGCAGATAACCTCTCAACAGATTTGTGGGCATGGAGAAAATATGGACAAAAACCCATTAAAGGTTCTCCATATCCAAgGAACTATTATAGATGTAGTAGTTCCAAAGGTTGCACTGCGAGAAAGCAAGTTGAAAGGAGCAACACTGAATCAGACATGTTTATTGTGACGTACACCGGAGATCACAACCACCCTAGACCCACCCACCGGAACTCACTCGCTGGAAGTACACGAACCAAGTCTCCGGCGATACAACCACCCACTTCAATTTCTTGTCAACCCAACCCCACCACTTCTTGCTCCTCCTCTTTAACACCAAACTCTTTtggtgaggaagaagaagacatTGACATGGAAATTGAAACtgatgaagaaggtgaagatgGCTGTGATATTCCACAATCCAACCATGGCCAATAA 942 0.379 MAEDWDLFAIVRSCQSTTNTNTTTTTINSTIPSSINSTSNLKVELEYDAFSFPNIVQPITNEVQGLNQLFTSFNPTTNPNTTITTSGYGINPNSPNIARCIGQQHHNIAPTTSSSIWPNFVQEASTSSFNKFHNQQLQQQKHQLQEFHVPQSIQPQTPRSRKRKSQQGKMVCRVTADNLSTDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCTARKQVERSNTESDMFIVTYTGDHNHPRPTHRNSLAGSTRTKSPAIQPPTSISCQPNPTTSCSSSLTPNSFGEEEEDIDMEIETDEEGEDGCDIPQSNHGQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04366 313 MobiDBLite consensus disorder prediction 284 303 - -
Tsu01g04366 313 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 298 IPR044810 GO:0003700
Tsu01g04366 313 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 298 - -
Tsu01g04366 313 SUPERFAMILY WRKY DNA-binding domain 176 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu01g04366 313 MobiDBLite consensus disorder prediction 243 283 - -
Tsu01g04366 313 MobiDBLite consensus disorder prediction 150 170 - -
Tsu01g04366 313 Pfam WRKY DNA -binding domain 182 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g04366 313 MobiDBLite consensus disorder prediction 232 313 - -
Tsu01g04366 313 Gene3D WRKY domain 161 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu01g04366 313 ProSiteProfiles WRKY domain profile. 175 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g04366 313 SMART WRKY_cls 180 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04366 Tsu-Chr1 51539058 51540246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04366 159 298 WRKY Transcription Factor Family AT5G52830 58.940 7.65e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu01g04366 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04366 K13425 - cam:101509183 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01015 08 11149739 11151202 Tsu01g04366 01 51539058 51540246 ECH
Tsu04g02079 04 22908995 22910709 Tsu01g04366 01 51539058 51540246 ECH
Tsu02g00418 02 3518224 3519725 Tsu01g04366 01 51539058 51540246 ECH
Tsu01g04366 01 51539058 51540246 Tsu01g04366 01 51539058 51540246 ECH