Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04363 ATGGAAGACCATCCATCACCACTTCCACCAAAAACATACAAACTAACAGCAACTTCAATCTCTTACTCCAAAAACCTACAAACAAACAACACTTTCATTGCACCATTTCTCTTCTTCAAAAACTGTACACCAATTCCACCAACCTATATTCTCAAAGATGTTTCACTCACAGCATATCCTTCTGAGATTCTTGCCATAGTTGGTCCAAGTGGTGCAGGAAAATCAACTCTTTTAGACATTCTTTCAGCTAGAAGATTACCCTTAAGTGGAACACTTTCCCTTAACTCTTCACCTATTAATAACCCTTCAACATTCAGAAAACTTTCTGCTTATGTTCCTCAACATGATGCATGTTTACCTATGTTAACTGTTTCTGAAACTTTTGCTTTTTCGGCTTCTCTTCTTAAGCCGAAAACCATCGATATTGCTTCGATTGTTTCGTCTCTTTTAAATGAGCTTAGACTAACTCATTTAGCTAATACAAGACTTAATCATGGTTTATCTGGTGGTGAACGTAGAAGAGTCTCTATTGGACTTAGTCTTCTTCATGATCCTGCTGTTTTACTACTTGATGAACCTACTTCTGGTCTTGATAGTTCATCTGCTTACAAAGTCATGCAAACTCTTAAATCAACTTGTGTTTCATATAATAGAACAATTGTTCTTTCAATTCATCAACCAAGTTTCAAGATTCTCTCTTGTATTGATAGAATCTTGCTTCTTTCAAAAGGAACTGTTGTTCATCATGGAAGCTTAGCTTCACTTCAAGCATTTTTGCATTCAAAAGGTTTCACTGTTCCTCATCAGCTTAATGCATTGGAATATGCAATGGAAATATTAAACCAATTGAATGAGATTAATCCAATGATTACTCCTCCAAGTCCACCTGAATATTCAACTGAACAATCCTCACCAGAAAAATCTAAATCTACTATAAGTTGTAATTCTCTGTCTGAAAATATTGGAACTAGAAGTAAAAGTAGAGAAATCAGGTACAAAAGTTCAAGGATTCATGAAATTTGCACACTATATAGAAGATTTTGGAAGATCATATACAGAACAAGACAACTTCTGTTAACAAATACAGCAGAAGCACTTCTTGTTGGTCTTGTTTTAGGAACAATTTACATCAACATTGGATTTGATAAAGAAggtattgagaaaaggtttggtCTATTTGCATTCACTCTTACATTTCTACTATCTTCAACAACTGAAACACTTCCAATCTTTATCAATGAAAGACCAATCTTGTTAAGAGAAACATCAAGTGGTGTTTATAGGTTATCATCATATCTTATAGCAAACACACTCGTTTTCTTACCATATTTGTTAGTAGTTGCTGTTATTTACTCAATTCCAGTTTATTTCTTGGTTGGTCTATGCAGTTCTTGGATATCTTTTTCTTACTTTGTTTTGGTCATTTGGATCATTGTTCTTATGGCAAACTCATTTGTTCTGTTCTTGAGTTCTTTAGCACCAAACTACATTGCTGGAACTTCACTCATGACAGTGTTACTTGCAGCATTTTTTCTGTTCTCTGGTTACTTTATCTCTAAGGATTGTTTACCTAAGTATTGGCTCTTCATGCACTTGTTTTCTATGTACAAATATGCTCTTGATGCACTTCTTATCAATGAGTATTCTTGCTTAGTTACAAGGTGTTTTATATGGGTCCAAGAGAATGACTGCATGATTACTGGTGGTGATGTCTTGCAGAAGAAAGGGCTTCATGAGGGACAAAGATGGACTAATGTGTACTTTTTGATTGGATTCTTTGTGTTTTATCGTGTGCTTTGTTTCTTGGTTTTACTTAGAAGGGTTTCAAGATCCAAAACTTGA 1842 0.3426 MEDHPSPLPPKTYKLTATSISYSKNLQTNNTFIAPFLFFKNCTPIPPTYILKDVSLTAYPSEILAIVGPSGAGKSTLLDILSARRLPLSGTLSLNSSPINNPSTFRKLSAYVPQHDACLPMLTVSETFAFSASLLKPKTIDIASIVSSLLNELRLTHLANTRLNHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSSSAYKVMQTLKSTCVSYNRTIVLSIHQPSFKILSCIDRILLLSKGTVVHHGSLASLQAFLHSKGFTVPHQLNALEYAMEILNQLNEINPMITPPSPPEYSTEQSSPEKSKSTISCNSLSENIGTRSKSREIRYKSSRIHEICTLYRRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFDKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLVVAVIYSIPVYFLVGLCSSWISFSYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSLMTVLLAAFFLFSGYFISKDCLPKYWLFMHLFSMYKYALDALLINEYSCLVTRCFIWVQENDCMITGGDVLQKKGLHEGQRWTNVYFLIGFFVFYRVLCFLVLLRRVSRSKT 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04363 613 MobiDBLite consensus disorder prediction 300 314 - -
Tsu01g04363 613 ProSitePatterns ABC transporters family signature. 167 181 IPR017871 GO:0005524
Tsu01g04363 613 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 6 608 - -
Tsu01g04363 613 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 6 608 - -
Tsu01g04363 613 Pfam ABC transporter 51 195 IPR003439 GO:0005524
Tsu01g04363 613 Gene3D - 39 287 IPR027417 -
Tsu01g04363 613 MobiDBLite consensus disorder prediction 290 314 - -
Tsu01g04363 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 255 IPR027417 -
Tsu01g04363 613 Pfam ABC-2 type transporter 225 285 IPR043926 GO:0140359
Tsu01g04363 613 Pfam ABC-2 type transporter 339 548 IPR013525 GO:0016020|GO:0140359
Tsu01g04363 613 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 268 IPR003439 GO:0005524
Tsu01g04363 613 SMART AAA_5 60 245 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04363 Tsu-Chr1 51524505 51526796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04363 46 262 Calmodulin-binding Proteins AT2G36910 29.412 5.30e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04363 K05681 - gmx:100790712 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04363 01 51524505 51526796 Tsu01g04363 01 51524505 51526796 ECH