Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04356 ATGGAACAGAAGCACGTTTTGTTGTCAGCAGTGTTGGTTTTGGGATTGGGTGTGGGACTTGGAATATGGGTTGATCAAATTGGGGTTCTGTTGGTAGCACTGAGAGTTGGGATTGGGTTGTATGTAGGATTGGCTATATGGGCTGTTGGTTTTGGAGTTGGAGGTGATCATGTGTCTAATCAGATTTCTTCTAAGGATCAGATTGTGATGGAGGAGCTCATGAAACTAGTTATTGATGGGAAGGATAGTGAAGTTACATTTGATAAGTTTCCTTATTACTTAAGTGAAAGAATCAAAACTTTGTTGACAAATGCTggatattttcatttaaaacaaCATGATTCATCCAAGCACATGAGGAACCTTTTGCCAGTAAGCCGAGCTATTTTGCTTTCTGGACCTGCAGaattttatCATGAAGAGCTTGCCAAAGCTTTAGCACATTACTTTGAATCGAAGTTACTGTTTCTAGATGTTAATTACTTCTTTTCAAAGATGCAGGCCAAATACGGATGTCCTACAAAAGAACCATACTTTAAAAGGTCCATATCTGAGGTGACTCTGGAGTGCATGTCTGGTTTATTTAGTTCCTTGTCAATCCTCCCATCAACAGGCGCAATCAGAGCTCCTTCGAAGTCGACAAGCCGCTACTTTCTTGATGAAAAGCTTTTTCTAAATTCACTCTACAAGGTCTTGGTTTCTATATCAGAAACTGGATCtgttattttatatatcaagGATGTCGAAAAAATCTTTCTTCGATCACCAAGGTTGCACAGTTTGTTCCAACGGCTATTAAATAAACTTTCAGGATCAGTGTTTGTACTCGGTTCCCGGCAGTATGGTTTGAAAGACCAATTTACAAAAACTGATGAAAAACTCACTATGTTATTCCCTTACTACATTGATATCAAACTGCCTCTAGATGAGGCTCATATCAAAATCTGGAAAAGCCAACTAAAAGAGGCCACAAAAAAGACTCAATTGAAAGATTACACCATCCGTGTTGCTGAAGTGCTTGCAGCAAATGACCTTGATTGTGATGACTTGGATACAATCAACCATACAGACATGATGCTACTCAGTAAGCACACTGAAGAGATTGTGGCATTGGCAATATTCAATCACTTGATGGATACCAAAAATCCAGAATACCGGAATGGAATCCGAATTATATCGGCCAAGAGTTTGTGCGATGTATTGAGTCTGTTCCAGGAGGGTGAAAGTGGGGAGAAGGATAATAAGAAGACTAAACAAGAATCAGAAAAGACATCTTGTTCTGACGACTTGGAGGAGCACATAAGACAAGAGCTTGTTCCTGCAAATGAGATAAATGTGACTTTTTCAGATATTGGTGCATTGGATGATGTtaaagaatcacttcaagaagcgGTTATGCTTCCCCTTAGAAGACCAGATCTTTTCAAAGGCAATGGGATTCTGAAGCCGTGTAAAGGTGTGTTGCTGTTTGGACCTCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAAAGAAGCTGGAGCAAGTTTCATCAACGTCTCTTCGTCCGCAATCCATTCAAAGTGGCTCGGACATTCTGAAAAGAATGTCCGAGCTCTGTTTTCAGTAGCGGCAAAGGTTGCCCCAACTATTATTTTCATTGATGAAGTTGATAGCATGCTTGGACAACGGTCTGCACGTGAGCACGATACAATGAGAAGGGTTAAAAACGAATTCATGTCCCGTTGGGATGGACTATTGTCAAAACCTGATGACAGGATTATTGTTCTTGGTGCCACCAACATGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTCCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAAAATAGGGAAACGATCTTGAAAACTCTTCTAGCTAACGAAAAACATGACGATATAGACTTCAAAGAGCTTTCAACTATGACAGAAGGATATAGTGGAAGTGATCTTAAGAACTTGTGCATGACTGCAGCATATCGCCCCCTTAAGGAGCTAATACAACAggagaaggaaaaagaaatggaaaacaagaaaaaagtgGCAGAAGCTGAAATCTCAAAAGATGCTTCCAATGATACCAAAGAAGATCAAGCGATTTCCCTCAGTCCTTTAAACATGGAAGATCAAGCAGAAATCTCAAAAGATGATTCCAATGCTACTGAAGAAGTTAAAGAAGATCAAGTGATTTCCCTCGGGCCTTTGAACATGGAAGATCAAGCTGAAATCTCAAAAGATGCTTCCAATGCTACCGAAGAAGATAAAGAAGACCAAGTGATTGCCCTCAGGCCTTTAAACATGGAAGACATGAGACAGGCAAAGAATAAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATAATGAACAGGTTGAAGGAGTGGAATAATTTGTTTGGAGAAGGAGGTTCAAGGAAGAAAGAGGAGCAGCTCAGTTATTTCCTTTAG 2460 0.3915 MEQKHVLLSAVLVLGLGVGLGIWVDQIGVLLVALRVGIGLYVGLAIWAVGFGVGGDHVSNQISSKDQIVMEELMKLVIDGKDSEVTFDKFPYYLSERIKTLLTNAGYFHLKQHDSSKHMRNLLPVSRAILLSGPAEFYHEELAKALAHYFESKLLFLDVNYFFSKMQAKYGCPTKEPYFKRSISEVTLECMSGLFSSLSILPSTGAIRAPSKSTSRYFLDEKLFLNSLYKVLVSISETGSVILYIKDVEKIFLRSPRLHSLFQRLLNKLSGSVFVLGSRQYGLKDQFTKTDEKLTMLFPYYIDIKLPLDEAHIKIWKSQLKEATKKTQLKDYTIRVAEVLAANDLDCDDLDTINHTDMMLLSKHTEEIVALAIFNHLMDTKNPEYRNGIRIISAKSLCDVLSLFQEGESGEKDNKKTKQESEKTSCSDDLEEHIRQELVPANEINVTFSDIGALDDVKESLQEAVMLPLRRPDLFKGNGILKPCKGVLLFGPPGTGKTMLAKAIAKEAGASFINVSSSAIHSKWLGHSEKNVRALFSVAAKVAPTIIFIDEVDSMLGQRSAREHDTMRRVKNEFMSRWDGLLSKPDDRIIVLGATNMPFDLDEAIIRRFQRRIMVGLPSAENRETILKTLLANEKHDDIDFKELSTMTEGYSGSDLKNLCMTAAYRPLKELIQQEKEKEMENKKKVAEAEISKDASNDTKEDQAISLSPLNMEDQAEISKDDSNATEEVKEDQVISLGPLNMEDQAEISKDASNATEEDKEDQVIALRPLNMEDMRQAKNKVAASFAAEGSIMNRLKEWNNLFGEGGSRKKEEQLSYFL 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04356 819 CDD AAA 485 617 - -
Tsu01g04356 819 SMART AAA_5 483 619 IPR003593 -
Tsu01g04356 819 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 426 715 - -
Tsu01g04356 819 Pfam AAA+ lid domain 638 681 IPR041569 -
Tsu01g04356 819 MobiDBLite consensus disorder prediction 676 700 - -
Tsu01g04356 819 MobiDBLite consensus disorder prediction 409 429 - -
Tsu01g04356 819 Pfam ATPase family associated with various cellular activities (AAA) 487 616 IPR003959 GO:0005524|GO:0016887
Tsu01g04356 819 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 207 423 - -
Tsu01g04356 819 Gene3D - 445 617 IPR027417 -
Tsu01g04356 819 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 746 819 - -
Tsu01g04356 819 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 426 715 - -
Tsu01g04356 819 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 25 208 - -
Tsu01g04356 819 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 746 819 - -
Tsu01g04356 819 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 207 423 - -
Tsu01g04356 819 Gene3D - 618 699 - -
Tsu01g04356 819 Coils Coil 668 689 - -
Tsu01g04356 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 679 IPR027417 -
Tsu01g04356 819 MobiDBLite consensus disorder prediction 676 762 - -
Tsu01g04356 819 MobiDBLite consensus disorder prediction 715 729 - -
Tsu01g04356 819 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 25 208 - -
Tsu01g04356 819 ProSitePatterns AAA-protein family signature. 589 608 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04356 Tsu-Chr1 51481646 51488617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04356 446 676 Calmodulin-binding Proteins AT3G56690 40.506 7.74e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04356 - - cam:101506297 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04356 01 51481646 51488617 Tsu01g04356 01 51481646 51488617 ECH
Tsu06g02646 06 34100249 34106510 Tsu01g04356 01 51481646 51488617 PCT