Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04355 ATGGAAGATAAAGCTGTGATATCTATTTTAGGTGTTTTGACTGGTGTGAGTATGGGTTTAGGAATATGGGATATTGTTAAATGTCGTCGTATATATAATCAGAAGATTGTGATGGATGAGCTCATGAAACTAGTCATTGATGGAAAGGATACTGGAGTCACATTTGATGACTTTCCTTATTTCTTAAGTGAAAAAGTCAAAATTTTGTTGACAAATGCTGGATACGTTCATTTAACACAACATCGTTTATCTAAGCACACATGGAACCTTTCGCCAATAAGGCAATCTATTTTGCTTTCTGGACCAGCAGaaTTTTATCAGGAAAAGCTCGCCAAAGCTTTAGCACATTACTTTAAATCGAAGTTACTGATTCTAGATGTTAATTCCTTCTCTTTGGAGAAGAAATACGAATGTCCTACAGAAGAACCAGTAAGTTCGACTACAGCTCCTTTGAAGTGTACAAACAGCTTCTGTGTCAATGAAGATCGTTTCCTAGATTCACTCTACAAGGTATTGGTTTCTATATCAGAATCTGATTCTGTTATCTTGTACATCAAGGATGTTAAGAAGATCTTTCTTAAATCACATAGGATGTACATTTTGTTCCAAAATCTATTAAATAAACTTTCAGGATCAGTGTTGGTACTCGGTTCACGGACTTATAAATCAGAAGATAAATGCACAAAAGTTAATAAAAGACTCACTGCGTTATTCCCTTGCAACGTTGAGATCAAACAGCCTAAAGATGCGACTGGTCTCAAAATCTGGAAAGAACAACTAGAAGAGGATGTGAAAAATACTCAGTTGAAAGATACCCAAAACCGCATTTCTAAATTGCTTGCAGAAAATGACATTGAATGTGATGACCTGAATTCTATCGACCATAAGGACATTATGCAACTCAATAATCTCAGCAATGAGATTGTGTCATCTGcaattttttatcaattgaagGATAACAAAAATCCTGAGTACCGAAATGGAAAGCTAATTATATCGGCCGAAAGTTTGTGCCATGTATCGAGGGTGTTCCAAGAGGCTGAAAGTAATGAGAAGAAAAATCCTCCTGACAACGACAATGAGGAGTTAATAAGAAAAGAGTTGATCCCTGCAAAAGAGATAAATGTGACTTTTTCCGATATTGGTGCATTGGATGATGTtaaagaatcacttcaagaagcgCTTATGCTTCCTCTTAGAAGACCAGATCTTTTCAAAAGTGGTGGGATTTTGAAGCCATGTAAAGGTGTATTGCTTTTTGGACCTCCCGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAACGAAGCTGGAGCAAGTTTCATCAATGTCTCTGCATCCACCATCACTGACGTGTGGTTCGGACAATCTGAAAAGAGCATTCGGGCTTTGTTTTCTCTAGCGGCAAAGGTTGCCCCAACTGTGATTTTCATTGATGAAGTTGATAGCATGCTTGCACAGCGAGGGTCTAACAATGAATCCAACATAATGAGaaggattaaaaatgaattcatGTCCCATTGGGATGGACTATTGTCCAAACCCGATGCGAGAGTGGTTGTTCTTGGTGCCACCAACATGCCATTTGACCTTGATGAAGCAGTTATAAGACGGTTCCAGCGCAGGATCATGGTTGGTCTTCCATCTGCTGAGAACCGGGAAACGATCTTGAAAACTATATTACCTGAGGAAAACCATAAAGATATAGATTTCAAAGAGCTCTCAATTATGACAGAAGGATATAGTGGAAGTGATCTTAAGAATCTGTGCACGACTGCAGCTTATCGCCCCGTTAAGGAGCTACTGCAACAGGAAAAGGATAATCGTGTGGTTTCCCTCAGGCCTTTAAACATGGAAGACATGAGACAGGCAATGAATAAGGTGACTGCAAGTTTTGCTGCAGAAGGATCAATGATGAACATGTTGAAGGAGTGGAATGAAATATATGGAGAAGGAGGTTCAGGGAAGAAAGAAGCCCATAACCAGCTCAGTTATTATATTTAG 2007 0.3792 MEDKAVISILGVLTGVSMGLGIWDIVKCRRIYNQKIVMDELMKLVIDGKDTGVTFDDFPYFLSEKVKILLTNAGYVHLTQHRLSKHTWNLSPIRQSILLSGPAEFYQEKLAKALAHYFKSKLLILDVNSFSLEKKYECPTEEPVSSTTAPLKCTNSFCVNEDRFLDSLYKVLVSISESDSVILYIKDVKKIFLKSHRMYILFQNLLNKLSGSVLVLGSRTYKSEDKCTKVNKRLTALFPCNVEIKQPKDATGLKIWKEQLEEDVKNTQLKDTQNRISKLLAENDIECDDLNSIDHKDIMQLNNLSNEIVSSAIFYQLKDNKNPEYRNGKLIISAESLCHVSRVFQEAESNEKKNPPDNDNEELIRKELIPAKEINVTFSDIGALDDVKESLQEALMLPLRRPDLFKSGGILKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSASTITDVWFGQSEKSIRALFSLAAKVAPTVIFIDEVDSMLAQRGSNNESNIMRRIKNEFMSHWDGLLSKPDARVVVLGATNMPFDLDEAVIRRFQRRIMVGLPSAENRETILKTILPEENHKDIDFKELSIMTEGYSGSDLKNLCTTAAYRPVKELLQQEKDNRVVSLRPLNMEDMRQAMNKVTASFAAEGSMMNMLKEWNEIYGEGGSGKKEAHNQLSYYI 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04355 668 Pfam AAA+ lid domain 569 605 IPR041569 -
Tsu01g04355 668 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 147 353 - -
Tsu01g04355 668 SMART AAA_5 413 550 IPR003593 -
Tsu01g04355 668 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 144 - -
Tsu01g04355 668 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 147 353 - -
Tsu01g04355 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 632 IPR027417 -
Tsu01g04355 668 CDD AAA 415 548 - -
Tsu01g04355 668 Gene3D - 549 629 - -
Tsu01g04355 668 Pfam ATPase family associated with various cellular activities (AAA) 417 547 IPR003959 GO:0005524|GO:0016887
Tsu01g04355 668 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 144 - -
Tsu01g04355 668 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 606 667 - -
Tsu01g04355 668 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 354 607 - -
Tsu01g04355 668 ProSitePatterns AAA-protein family signature. 520 539 IPR003960 GO:0005524|GO:0016887
Tsu01g04355 668 Gene3D - 375 647 IPR027417 -
Tsu01g04355 668 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 606 667 - -
Tsu01g04355 668 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 354 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04355 Tsu-Chr1 51470322 51480467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04355 376 629 Calmodulin-binding Proteins AT3G56690 36.047 3.31e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04355 - - cam:101506297 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04355 01 51470322 51480467 Tsu01g04355 01 51470322 51480467 ECH