Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04352 ATGACAAATATGGATGGAGATGTTACCATGGTTGACTCAAATGGTACACATGACAATGTTCTTGATGTGGAGCCTCTCAGTATTGGAATACCGCTAGAATCCCCCTTAGAGCCCGTTGAAGGAATGGAGTTTGCATCAATTGAAGAGGCAAAAAATTACTACACAAGGTATGCTAAGAACAAAGGTTTTAGTTTTCGCATGGGTCGCGTTACTAAATCAAGAACAAATGGTATGCTAATTGGTCAAGaaattctttgttcaaaggaggGGTTTCGGGCCAAAAGATATATGAAACATGATAATAGTAGTCTTATTAAACAGGATGAAACAAGGGTGGGATGCAAGGCACGgttatatttaaagaaaaatgatgaTAGATGGATTGTTTCTAGATTTGAAAGAGACCATAATCACGAATTGTTTTCTCCTGGAAGTTCACAGTCTCTTCGCGTGCATAGAAAGAAAACTaaagtgcaaaaaaaacttGTTGATGTGCCTGATGAATCTGGTTTAGACCCCAGCAAAACAACATCTATCTTATGTACCGAAAGTGTTAGTATTGATAATTTTGGATCTAGCCAGCAAGATGTTATCAATTACTTAAGTGTAAAGAGACAAACACAATTAGAAAACGAAGATGCTCAGTTGATGTTATCATACTTTAAGAATTGTCAGTTGAAGAATACTGGATTTTTCTATGCATTTCAAATGGATGCCGAAGGAAAATTAGCTAATTGTTTTTGGGTCGATTCAAGATCTAGAATTGCTTACAAATATTTTAGTGATGTGGTTACTATTGATCCAACATACTTGACAAGTAAATACAAAGTTCCTTTTGTTCCATTTATGGGTGttaatcatcatcaacaatccATTCTTTTTGGCTGTGCTCTCTTATGGGACGAAAATGTAGAGAGTTTTGTTTGGTTGCTAAGTACTTGGTTAGAAGCAATGAATGGAGTTTGTCCTAAGACTATTATCACAGACCAAGGCACTGCTATCACCGATGCAGTTGCAAGGGTGTTTCCAAAGGTTAATCACCATTATTGTATGTGGCATATTGAGAAAAAAGTTTCAGAGTACTTGAATCACATATATCATGAACATGagtttaaaaatcatttttacaagTGCATTCACCAATCTAACACAATTGAAGAATTTGATTCTGAATGGGAAGCATTGGTTAATAAATATGGGTTACAAGATAATCTGTGGCTACAGGAGATATACTCAATTCGATCAAAATGGATTCCTGCATGTGTACGTCATAGTTTTTGTGCCGAAATGTCCACCACCCAAAGGAATGAAAGTATGGATAAGTTGTTTAAGGATTTTTTGGATTCAAGTACTCCATTGAGCAAGTTTGTGACACAATATGAGAAGGCTCTTGATGCATGTTACAACAAGGAAAGGGAGAAAAATGTCAAGACAATGAAGTTAAAACCACTTTTGCGAACTTTATATCCCATAGAAGAAGAAGCTTCAAAAATTTATACAAGAAAATTGTTTAGGATATTTCAAGATGAGTTGGTTGGCTCTCAAATGTTTACCACCGAGAAAGTTGAATTTTCTGATGAAGTGGCGACATACAAAATTCATGAAGTTTACAAAGAGAAGCCTAACTATTATGTTACTTTTCATGCAACTTCAAAAGAAGCAACTTGTACTTGTCACAAGTTTGAATTTTTGGGTATTCTTTGTAGGCATATCTTAACTGTATTCCTAAAGAAAAAGGTACATTATCTCCCTTCACAGTATGTTCTACAACGATGGACCCTAAATGCTAAGAAACAAAAAGTTCAAGGATTGTCAATTGAAGAATTTCAAGAAGGAGGAAACAAAGCTTCTAGCACTTTATTGTTTAATAGTGTTATGGTTCACTCTCTTGAATTTTCTGAAAGAGCTTCACGGtcagaaaaacatcataatATTGCAATTCATTGTTTGCAAAATGCAATTGAAAAACTTGATCTATTAGAGCTTGAAGAATCAAATGAGGAGTTTGTTAATTCAACATCTTAA 2025 0.3328 MTNMDGDVTMVDSNGTHDNVLDVEPLSIGIPLESPLEPVEGMEFASIEEAKNYYTRYAKNKGFSFRMGRVTKSRTNGMLIGQEILCSKEGFRAKRYMKHDNSSLIKQDETRVGCKARLYLKKNDDRWIVSRFERDHNHELFSPGSSQSLRVHRKKTKVQKKLVDVPDESGLDPSKTTSILCTESVSIDNFGSSQQDVINYLSVKRQTQLENEDAQLMLSYFKNCQLKNTGFFYAFQMDAEGKLANCFWVDSRSRIAYKYFSDVVTIDPTYLTSKYKVPFVPFMGVNHHQQSILFGCALLWDENVESFVWLLSTWLEAMNGVCPKTIITDQGTAITDAVARVFPKVNHHYCMWHIEKKVSEYLNHIYHEHEFKNHFYKCIHQSNTIEEFDSEWEALVNKYGLQDNLWLQEIYSIRSKWIPACVRHSFCAEMSTTQRNESMDKLFKDFLDSSTPLSKFVTQYEKALDACYNKEREKNVKTMKLKPLLRTLYPIEEEASKIYTRKLFRIFQDELVGSQMFTTEKVEFSDEVATYKIHEVYKEKPNYYVTFHATSKEATCTCHKFEFLGILCRHILTVFLKKKVHYLPSQYVLQRWTLNAKKQKVQGLSIEEFQEGGNKASSTLLFNSVMVHSLEFSERASRSEKHHNIAIHCLQNAIEKLDLLELEESNEEFVNSTS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04352 674 Pfam SWIM zinc finger 553 578 IPR007527 GO:0008270
Tsu01g04352 674 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 664 IPR031052 GO:0006355
Tsu01g04352 674 Pfam FAR1 DNA-binding domain 52 141 IPR004330 -
Tsu01g04352 674 ProSiteProfiles Zinc finger SWIM-type profile. 543 579 IPR007527 GO:0008270
Tsu01g04352 674 Pfam MULE transposase domain 263 357 IPR018289 -
Tsu01g04352 674 SMART 26again6 554 581 IPR006564 GO:0008270
Tsu01g04352 674 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 35 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04352 Tsu-Chr1 51450902 51454166 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu01g04352 MULE 1.2e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04352 - - lang:109336948 941.799