Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04343 ATGACAGGATTTTGGAGTGTGTTTTGTGGGCAATCTGGTTGTTCAAATTCAAAGCCTTGCAGTTATTATGATGTTAAGTTTTTCGTTGATCCTTCCACATGTATCAACCATTTCTTAATATCTTGCTTTGATTTGTTGCTGCTCATCATGCTCCTGTTTATAATGATCAAGAAGTCATTATCAAAACCATATCAGGGTCTTGTAAATGGCCAAAGATATTCAAAGCTGCAAATAGTTTCTTCCATAGCCAACGGCGTTCTTGGATTAGTGCATTTAGTCTTTGGTATTTGGATTTTAGAAGAGAAGTTGAGAAAAAACCAAACTGCATTACCTCTTGATTTGTGGTTGCTAGAATTATTTCAGGGATTAACATGGCTGTTAGTTGGTTTAACTTTAAGTCTTAAGTTGAAACAACTTCCAAGATCATGGTTAAGGGTTTTTTCTATTCTTATGTTCTTGGTTTCTGGTATAAACTGTGGTATATCCTTGTTTTATGCAATTAGTAAGATGCAACTGTCACTAAAGGTAGCATTAGATGTTCTATCTTTTCCTGTGGCAATTGTATTGCTACTATGCACATACAAGGAATCTAGGTATAGCGATGCTGACAGAGAAATCGATGAAAGCCTTTATGCCCCTTTAAACGGCGAGTTGAATAAAAATGATTCTGTTAGTCATGTGACGACGCTATTTGCCAAAGCCGGATTCTTCAGTAGGATGTCATTTTGGTGGATGAATTCATTGATGAAGAGAGGTAAAGAGAAAACTCTTCAGGACGAAGATGTCGCGAAGTTGAGGGAGGAAGATAGAGCAGAAAGTTGTTATTCAATGTTTCTAGAGCAATTAAACAAGCAGAAACAGAAGGATCCATCCTCACAACCATCTGTTTTGAAGGCAATAGTTTTATGCCATTGGagagaaattttgatatctgGATTCTTTGCATTGCTCAAGGTACTTGCACTTTCTTCTGGACCTTTGCTTCTGAATTCCTTTATATTAGTCGCTGAGGGTTATGAGAGTTTCAAATATGAAGGTTTTGTATTGGCCATAGCacttttctttataaaaaatatagaatctCTATCACAAAGGCAGTGGTATTTTCGCTCGAGATTAATCGGTCTCAAAATTAGGTCACTGCTAACTGCAGCCGTTTATAAAAAGCAACTGAGGTTATCTAATTCTGCTAGATTGATGCATTCTAGTGGTGAGATAATGAATTATGTAACTGTGGATGCGTATAGAATTGGAGAATTTCCTTACTGGTTTCACCAAACGTGGACAACTAGCTTCCAGCTATGTATCTCATTAGTAATACTTTATCGTGCCATTGGACTAGCTACAATAGCTTCCTTGACAGTGATAGTTATCACAGTACTTTGTAATACTCCACTTGCAAAGTTACAGCATAAGTTTCAAAGCAAACTTATGGTTGCACAAGATGAGAGATTGAAGGCTACTTCTGAGGCGCTTGTGAATATGAAGGTTCTGAAATTGTATGCATGGGAAACCAGCTTTAAAAATTGTATAGAAAGATTAAGGAATGAGGAGCTTAAATGGTTGTCTGCAGTGCAATTGAGAAGGGCATACAACACGTTTCTCTTTTGGTCGTCACCAGTTTTGGTCTCTGCTGCTTCGTTTGGAGCTTGTTATTTTCTTAATGTTCCATTGCATGCAAATAATGTTTTCACTTTTGTGGCGACTTTACGGCTCGTTCAAGATCCGATTAGGACCATCCCTGATGTTATTGGAGTGGCCATTCAGGCAAAAGTTGCATTTGCTCGGATTCTAAAATTCCTGGAGGCGCCCGAACTGCAGACTGAAAATGTTAGGAAGACGTGTTCAGAAGGCAATATGAGAGGCTCAATTTCAATAAAATCTGCTGACTTTTCATGGGAAGATAATAATGTATCAAAGTCAACATTGAGAAATGTTAATTTGGAAGTTAGACCTGGACAAAAGGTCGCAATTTGTGGAGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTAACACTCAAGGGAAAATTGATGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAAACAGGTTCAGTAAGGGATAATATATTGTTTGGATCACCTATGGATGCTCAAAAATATCAGGAAACGCTTCACAGGTCTTCACTGGTTAAAGATCTTGAGCTGCTTCCCCATGGTGATCTCACTGAAATAGGAGAAAGAGGGGTTAACTTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCCCGTGCTCTTTATCAGAATGCTGATATATATCTCTTGGATGATCCTTTCAGTGCCGTTGATGCACATACTGCCACAAATTTGTTTAATGAATACATTATGGAAGGACTTGCTGAGAAGACAGTCTTGCTTGTGACTCATCAAGTTGACTTCCTTCCAgcatttgattttgttttgTTGATGTCAGATGGGGAAATCCTACAAGCTGCTCCTTATCAACAATTGTTGACATCAAGCAAAGATTTTCAGGATCTTGTGAATGCTCACAAAGAGACCGCTGGATCTGACCGGCTTATGGACGTTACTTCTTctgaaagaaattcaaattctgTGAAAGAGATTAGGAAAACATATGTTgagaaggaaaaacaatttggagCACCAAAAGGTGATCAATTGATTAAGcaagaagagagagagataggAGACCAAGGGTTTAAGCCTTACTTACAGTATCTAAGTCAGAATAAAGGATACGTATACTTCTCGGTGGCTGTTCTTTCACAGATTATATTTGTGATTTGTCTGATATTGCAAAACTCGTGGATGGCTGCTAACGTTGACAATCCCAAAGTCAGCACTTTGAAATTGATTCTAGTTTACTTGTCGATTGGAGTTACTTCAACAATTTTCTTATTGGCGCGAAGTCTTTTTTCAGTTGCTTTGGGTCTTCAATCTTCAAAATCTTTGTTCTTACAGTTACTAAACTCCCTATTTCGTGCACCTATGTCGTTTTATGATTCCACGCCTTTAGGACGGATACTTAGTAGGGTCTCTTCTGATCTCAGCATTGTTGATCTTGATGTTCCACTTGGCCTTCTTTTCGCTGTCGCGGCTACTTCGAATTGTTATGCTAGTCTAACTGTTTTAGCTGTAGTTACTTGGCAAGTCATGTTTGTCTCCATACCGATGATTTATTTCGCACTGCGCTTGCAGAGATACTACTTTGCCACAGCAAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTGTGGCTAACCATCTAGCTGAATCTGTTGCCGGAGCTGTGACAATAAGGGCCTTTGAAGAGGAAGATCGTTTTTTTGTAAAGAACTTTAATCTAATTGATATCAATGCTTCTCCTTTCTTTCATAGTTTTGCTGCAAACGAGTGGTTGATTCAACGGTTAGAAACAGTCAGTGCAGTTGTTCTTGCATCTGCTGCCCTTTCCATGGTTGTACTTCCACCCGGAACATTCTCCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAATGCTTCCTTAgtattttcaattcaaaatcaatGCAATATAGCTAATTACATAATATCAGTGGAGAGACTAAATCAATATACACATGTACCAAGTGAGGCCCCAGAAGTAATAGAAGGAAATCGTCCTCCGCCGAATTGGCCAGTTGTTGGTAGAGTAGAAATAAAGGAACTTCagATACGGTACAGGCCTGATGCGCCACTAGTACTCCGCGGAATCACATGTACATTTGAAGGAGGACACAAAATTGGTATAGTTGGTCGCACCGGCAGTGGCAAGACCACTCTTATTGGCGCTTTATTTCGTTTAGTGGAGCCAGCAGGTGGAAAAATCATTGTTGATGGCATTGACATTGGTTCCATTGGACTTCATGATTTGAGGTCACGCTTTGGTATTATACCTCAGGACCCTACTCTTTTTAATGGAACAGTCAGATACAATTTGGATCCCTTATCTCAACACTCTGATCAAGATATATGGGAGGTTCTTGGGAAGTGTCAGTTGCATGAGGCtgtccaagaaaaagaaggtgGTTTAGACTCATCAGTTGTTGAAGATGGCGCAAATTGGAGCATGGGACAACGGCAGTTATTCTGTTTGGGCCGTGCTTTGCTGAGAAGAAGTCGGGTATTGGTGCTCGATGAAGCAACCGCGTCAATTGATAATGCAACTGACTTGATTCTGCAGAAAACCATTAGGACTGAGTTTGCTGATTGTACGGTAATCACGGTAGCTCACAGGATACCAACTGTGATGGATTGCACCAAGGTTCTTTCCATCAGTGATGGAAAACTGATAGAGTATGACGAGCCAATGAAGTTGATGAAGAGAGAAGGATCTTTGTTTGGGAAGCTTGTCAAAGAATATTGGTCTCATTTTCAATCTGCAGAGGCTCATTAA 4449 0.3848 MTGFWSVFCGQSGCSNSKPCSYYDVKFFVDPSTCINHFLISCFDLLLLIMLLFIMIKKSLSKPYQGLVNGQRYSKLQIVSSIANGVLGLVHLVFGIWILEEKLRKNQTALPLDLWLLELFQGLTWLLVGLTLSLKLKQLPRSWLRVFSILMFLVSGINCGISLFYAISKMQLSLKVALDVLSFPVAIVLLLCTYKESRYSDADREIDESLYAPLNGELNKNDSVSHVTTLFAKAGFFSRMSFWWMNSLMKRGKEKTLQDEDVAKLREEDRAESCYSMFLEQLNKQKQKDPSSQPSVLKAIVLCHWREILISGFFALLKVLALSSGPLLLNSFILVAEGYESFKYEGFVLAIALFFIKNIESLSQRQWYFRSRLIGLKIRSLLTAAVYKKQLRLSNSARLMHSSGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILYRAIGLATIASLTVIVITVLCNTPLAKLQHKFQSKLMVAQDERLKATSEALVNMKVLKLYAWETSFKNCIERLRNEELKWLSAVQLRRAYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVAIQAKVAFARILKFLEAPELQTENVRKTCSEGNMRGSISIKSADFSWEDNNVSKSTLRNVNLEVRPGQKVAICGEVGSGKSTLLAAILREVPNTQGKIDVYGKFAYVSQTAWIQTGSVRDNILFGSPMDAQKYQETLHRSSLVKDLELLPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYIMEGLAEKTVLLVTHQVDFLPAFDFVLLMSDGEILQAAPYQQLLTSSKDFQDLVNAHKETAGSDRLMDVTSSERNSNSVKEIRKTYVEKEKQFGAPKGDQLIKQEEREIGDQGFKPYLQYLSQNKGYVYFSVAVLSQIIFVICLILQNSWMAANVDNPKVSTLKLILVYLSIGVTSTIFLLARSLFSVALGLQSSKSLFLQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPLGLLFAVAATSNCYASLTVLAVVTWQVMFVSIPMIYFALRLQRYYFATAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFVKNFNLIDINASPFFHSFAANEWLIQRLETVSAVVLASAALSMVVLPPGTFSSGFIGMALSYGLSLNASLVFSIQNQCNIANYIISVERLNQYTHVPSEAPEVIEGNRPPPNWPVVGRVEIKELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDGIDIGSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQDIWEVLGKCQLHEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRVLVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLIEYDEPMKLMKREGSLFGKLVKEYWSHFQSAEAH 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04343 1482 Gene3D ABC transporter type 1, transmembrane domain 279 606 IPR036640 GO:0005524|GO:0016021
Tsu01g04343 1482 Gene3D ABC transporter type 1, transmembrane domain 886 1217 IPR036640 GO:0005524|GO:0016021
Tsu01g04343 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 848 IPR027417 -
Tsu01g04343 1482 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 924 1199 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g04343 1482 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 72 1482 - -
Tsu01g04343 1482 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 72 1482 - -
Tsu01g04343 1482 Gene3D - 619 854 IPR027417 -
Tsu01g04343 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1463 IPR027417 -
Tsu01g04343 1482 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016021
Tsu01g04343 1482 CDD ABCC_MRP_domain1 624 825 - -
Tsu01g04343 1482 Pfam ABC transporter 643 777 IPR003439 GO:0005524
Tsu01g04343 1482 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Tsu01g04343 1482 CDD ABCC_MRP_domain2 1234 1454 - -
Tsu01g04343 1482 Gene3D - 1220 1471 IPR027417 -
Tsu01g04343 1482 SUPERFAMILY ABC transporter transmembrane region 908 1216 IPR036640 GO:0005524|GO:0016021
Tsu01g04343 1482 CDD ABC_6TM_ABCC_D2 922 1211 IPR044726 GO:0140359
Tsu01g04343 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1238 1470 IPR003439 GO:0005524
Tsu01g04343 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 848 IPR003439 GO:0005524
Tsu01g04343 1482 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Tsu01g04343 1482 SMART AAA_5 652 825 IPR003593 -
Tsu01g04343 1482 SMART AAA_5 1262 1454 IPR003593 -
Tsu01g04343 1482 Pfam ABC transporter transmembrane region 308 574 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g04343 1482 Pfam ABC transporter transmembrane region 921 1170 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g04343 1482 Pfam ABC transporter 1253 1401 IPR003439 GO:0005524
Tsu01g04343 1482 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04343 Tsu-Chr1 51383987 51390997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04343 619 886 Calmodulin-binding Proteins AT2G36910 28.571 9.35e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04343 K05666 - gmx:100811468 2417.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04343 01 51383987 51390997 Tsu01g04343 01 51383987 51390997 ECH
Tsu06g02696 06 34760407 34766618 Tsu01g04343 01 51383987 51390997 PCT