Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04341 ATGGGTCTTCCCAATTCAGATAAAGACTCTTACTTTGGGGTTGAATTCGACACGAGTTATGATCCTTCTCTTGGTGACATTAATGGAAACCATGTTGGTATTGATGTTAACAGTGTTGTTTCTTTTGCTTCTGTTGATGTTCTTTCACGTGGTGTTGATTTGAAAAGTGGAAAAATCATCAATGCATGGATTGAGTATAGAGATGATATGAAAATGGTTCGTGTTTGGGTTGGTTACTCTTCAACTAGACCTTTAACACCGATTcttgcttcacttattgatctTTCTGAGATATTCAAAGAGTTTATGCATGTTGGTTTCTCTGCTTCTAATGGAAAAGGTTCAAGTATTCACTTTGTTCATCATTGGCAATTCAAAACTTTGAGTTATTCTCATTCTGTTAGTCCTATAGATGATGTAGAAGAAGGTGATTGCTTCTTGTGTTATTCCAGTGATTCGAAAGCGTCGAAGAAAAATGGTGGAAATTTAAGAAGGAAAAATTATGGTGAGATTGCTCTTGGAATTAGTGGAATAACAGCTTTTGTTGTGTCTGCAATGGCATTAGCTGTTATGCTATGTGTTATCTTGAAAAGGAAAAAGGGGGGTGTGATTAGAAAGATTAGTGAAGGTCAAAGTTGTAGATTTCAAACAAATAAAGTTCCAGTGAGGTTATCACTTTCAGAGATAACATCAGCTACAATGGGGTTTAATAGAGATAGACTAGTTGGTGAAGGTGCATCAGCAAAAGTTTATAAAGGGTCACTTCCATTTGGAGGTGATGTAGCTGTCAAGAGATTCGAAAAGGTCGATGATTTGGACCGTTTACATAACCCTTTCGCGACTGAGTTTGCTACAATGGTCGGTTGCTTGCGGCACAAGAATCTGGTTCAGCTTAAAGGATGGTGTTGTGAAGGGAATGAGTTAGTGTTGGTTTATGAGTATCTTCCAAATGGAAGCCTTGATAAAGTTCTGCATAGAAACTCGAGTTCTTCGGTTGTTCTTTCATGGAACCAAAGAGTTAATATAATTCTTGGTGTCGCTGCTGCTCTTACTTATCTTCATGAAGAATGTGAGAGACAAATCATTCATAGAGATGTGAAGACATGTAACATAATGCTTGATTCTGATTTCAATGCAAAGCTTGTTGCAACCGGGAGGAAACCTGTTGGAGAAGATGGAACTTTGGTCGGCGATTATGTTTGGAATTTGTGGAAAAAGAATAGACTCATTGACGCGGCTGATCCGAAATTGATGGGGAATTTCGATGTTATTGAGATGGAAAGGATGTTATTGGTAGGGCTTGTTTGTGTGCATCCTGATTATGAAAAGAGACCTAGAGTTAAAGATGCAGCTAGAATGATTAAGAAAGAAGTACCACTTCCTTTGTTGCCAACAACTAAACCAAGGGTTAGAATTAGGCCTATTTGTTGTAATGATTCACCTGAATCACAAAAATTTGTTGATGATTGGGTTAGTAATGATGAGGCTCCTTATTTGACTCCTAGAAGTCAGTTCAACTAG 1521 0.3734 MGLPNSDKDSYFGVEFDTSYDPSLGDINGNHVGIDVNSVVSFASVDVLSRGVDLKSGKIINAWIEYRDDMKMVRVWVGYSSTRPLTPILASLIDLSEIFKEFMHVGFSASNGKGSSIHFVHHWQFKTLSYSHSVSPIDDVEEGDCFLCYSSDSKASKKNGGNLRRKNYGEIALGISGITAFVVSAMALAVMLCVILKRKKGGVIRKISEGQSCRFQTNKVPVRLSLSEITSATMGFNRDRLVGEGASAKVYKGSLPFGGDVAVKRFEKVDDLDRLHNPFATEFATMVGCLRHKNLVQLKGWCCEGNELVLVYEYLPNGSLDKVLHRNSSSSVVLSWNQRVNIILGVAAALTYLHEECERQIIHRDVKTCNIMLDSDFNAKLVATGRKPVGEDGTLVGDYVWNLWKKNRLIDAADPKLMGNFDVIEMERMLLVGLVCVHPDYEKRPRVKDAARMIKKEVPLPLLPTTKPRVRIRPICCNDSPESQKFVDDWVSNDEAPYLTPRSQFN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04341 506 Gene3D - 1 130 - -
Tsu01g04341 506 Gene3D Phosphorylase Kinase; domain 1 200 314 - -
Tsu01g04341 506 ProSiteProfiles Protein kinase domain profile. 236 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04341 506 Pfam Protein kinase domain 237 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04341 506 SMART serkin_6 236 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04341 506 Gene3D Transferase(Phosphotransferase) domain 1 384 473 - -
Tsu01g04341 506 PANTHER - 8 381 - -
Tsu01g04341 506 PANTHER - 382 472 - -
Tsu01g04341 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 361 373 IPR008271 GO:0004672|GO:0006468
Tsu01g04341 506 SUPERFAMILY Concanavalin A-like lectins/glucanases 9 140 IPR013320 -
Tsu01g04341 506 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 382 472 - -
Tsu01g04341 506 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 8 381 - -
Tsu01g04341 506 ProSitePatterns Protein kinases ATP-binding region signature. 242 264 IPR017441 GO:0005524
Tsu01g04341 506 Pfam Legume lectin domain 7 128 IPR001220 GO:0030246
Tsu01g04341 506 Gene3D Transferase(Phosphotransferase) domain 1 315 383 - -
Tsu01g04341 506 CDD lectin_legume_LecRK_Arcelin_ConA 1 127 IPR001220 GO:0030246
Tsu01g04341 506 SUPERFAMILY Protein kinase-like (PK-like) 221 473 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04341 Tsu-Chr1 51374309 51375924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04341 1 506 Receptor kinase-like Gene Family AT5G42120 46.690 1.26e-163 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu01g04341 Pkinase 1.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04341 - - gmx:100783805 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04341 01 51374309 51375924 Tsu01g04341 01 51374309 51375924 ECH