Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04325 ATggatacaaatacaaatacagTTACACCACCGTCACCGTCATCGTTACAAAACATAAGCCCCAGCATTCTCATTATTGTTATAGTTCTCGCCGTCACCGTTATCGTTTCCATCGCAATCTGTTTCATTCTCCGTCACCTCAACTGTAACTGTCTCCGCCGTCTCATCTCCGatccaacaccaacaacaacaacgatCGAATCAACATCTCACAGTAACCGAATCTCGCCGGAGATAGTACCTCCTTCAGTTATCGATTCACTTCCTCTGTTCACATACTCCTCCATTTCTCGCCGTTCCTCCGCCGTCACCGCCGCTGACTGCGCCGTTTGTCTGTCGAAGTTCCGTAACAGTGACCTCCTCCGTTCTCTTCCTCTCTGCTGTCACGCATTCCATGCTGAATGTATTGACACGTGGCTCCGATCGAATCTCTCGTGTCCTCTCTGTCGTTCCTCCATTTTCCCTTCCGATTCCGACCTCGCAAAAATTCTCCGATCAAATTCGTCTGACAGTTTTCGAGTCGAAATCGGAAATGTAAGCCGACGAGGAACAAATTCAAACAATCCAGAACTCGCCGGTGGTGGAGGCGGTGACTCGAGGTCCTATTCTATTGGATCATTTGATTATTACGTTGTTGAACCTTCCGAAGTTCCGTTCAGTCAAGATCACCGGAGAAGTATTTCTGATCAGAAGGAAATTCACATTCCGTTTTCAGATGATTCTTCTGTTGTTACTGTTGCCGGTGAAGTTTCCGGCAGTGGACATTGGTTGAAGGATTACGTGGACAGACTTTCGGCTACTATTTCATCCCGAACGGCGTCGTTTCGAAGCTCCGGAAGATTCTTTGGTGGTGGCGGAAGTAGTCGGAGAATTGAACCGGTTGATTATGATGTGGAAGGTGGTAGAATTGGTGAAGAGATTAGTGAAATGTTTCGTTGGCTTTCAGGGGTATGA 954 0.4539 MDTNTNTVTPPSPSSLQNISPSILIIVIVLAVTVIVSIAICFILRHLNCNCLRRLISDPTPTTTTIESTSHSNRISPEIVPPSVIDSLPLFTYSSISRRSSAVTAADCAVCLSKFRNSDLLRSLPLCCHAFHAECIDTWLRSNLSCPLCRSSIFPSDSDLAKILRSNSSDSFRVEIGNVSRRGTNSNNPELAGGGGGDSRSYSIGSFDYYVVEPSEVPFSQDHRRSISDQKEIHIPFSDDSSVVTVAGEVSGSGHWLKDYVDRLSATISSRTASFRSSGRFFGGGGSSRRIEPVDYDVEGGRIGEEISEMFRWLSGV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04325 317 SMART ring_2 108 149 IPR001841 -
Tsu01g04325 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 155 IPR013083 -
Tsu01g04325 317 MobiDBLite consensus disorder prediction 178 199 - -
Tsu01g04325 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 302 - -
Tsu01g04325 317 MobiDBLite consensus disorder prediction 178 192 - -
Tsu01g04325 317 SUPERFAMILY RING/U-box 84 156 - -
Tsu01g04325 317 Pfam Ring finger domain 107 150 IPR001841 -
Tsu01g04325 317 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Tsu01g04325 317 CDD RING-H2_PA-TM-RING 107 150 - -
Tsu01g04325 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 6 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04325 Tsu-Chr1 51167537 51168490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04325 71 154 C3H Transcription Factor Family AT3G18930 49.451 4.02e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04325 K10663 - gmx:100776516 317.39