Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04314 ATGCCGGGTCTACAAGGAATCAACATGGCAATGACAATGATTCATGATGCAAGAGAAGAAAAGCATGAAAATATTCAAGAAGAGAACATTAATAGTCTTACCAACCTTGCTATCACACAATGCATTGGAGAAACAGATGCCAAATTAAATGGACTAATTACTCGCTATGTGGATACCATAACCAAAAACAACTTGCGTAACTTAgGTTACCCCACTAATCAAGACTTCAATTATGAGGCATTGGCACCAttgattcattttcatttaaaCAATGCTGGAGATCCATTTCTTGGAAGCAGTTTCTCTCTAAATTCAATGACATTTGAAGTTGGTGTGCTTGATTGGTTTGCTAAATTATGGGAGATAGAGAAGAATGAGTATTGGGGATACGTCACATCTGGTGGAACTGAAGGCAATCTTCATGGAATTTTAGTAGGgAGAGAAAAATTTCCAGATGGAATTCTATATACCTCAGAAGATTCACATTATTCAATACCTAAAATAGCAAGAATGTATCGAATGCAATGTGTCAAGGTTGACTCTTTGATCTCTGGTGAAATTGATTGTGTTGATCTAGAGGCTTCTCTTCTTGCCAACAAGGACAAACCGGCCATCATCAATCTAAACATAGgGACAACTTTGAAAGGAGCTATCGATGATATTGATCTTGTAATACAAACACTTTACAAATGTGGTTTTACTCGTGATCGATTCTACATTCATTGCGATGGTGCTCTATTTGGAATCATGTTGCCTTTTATCGAACAAGCTCAAAGGATTAGCTTCAAAAAACCTATCGACAGTGTAACTATTTCAGGTCATAAGTTTTTGGGATGTCCTACGCCTTGTGGAGTTTTGATAACTCGTTTGAAATACATTGATGCCCTCTCGAGAGAATGTGGCATCATTGCTTCAAGGGATGCTACAATCACAGGCAGCCGCAGCGGGCATGCTCCAATCTTATTGTGGTATGCTCTCAAAAAAAGTGGTTTAATTGGAATTGAGAATGAAGTGAATAATTGCATGATGAAATCACGTTACTTGTTAAATAAACTACGTGATGCTGGAATTGGTGCAATGTTAAATGAGTTTAGCAACATAGTTGTATTTGAGAGGCCCCAAGATGATCAATTTACCCGTAGATGGAATTTGGCAAGCAATGAAAAGATTGCACATGTGGTAGTGTTGAAGCATGTTACTATTGAAATGCTTGACTCATTTGTTAGTGAATTTGTCCAAAAACGATTGATTTGGTCTAAATTTGGACAATTTCAGCCTCTATGCATTGCAAAGGAAGTTGGTTCAAGAAATTGTGCTTGTTCGTTACACAACTTATCTGGAAATTATCAACTAAATTGTATGTGA 1365 0.367 MPGLQGINMAMTMIHDAREEKHENIQEENINSLTNLAITQCIGETDAKLNGLITRYVDTITKNNLRNLGYPTNQDFNYEALAPLIHFHLNNAGDPFLGSSFSLNSMTFEVGVLDWFAKLWEIEKNEYWGYVTSGGTEGNLHGILVGREKFPDGILYTSEDSHYSIPKIARMYRMQCVKVDSLISGEIDCVDLEASLLANKDKPAIINLNIGTTLKGAIDDIDLVIQTLYKCGFTRDRFYIHCDGALFGIMLPFIEQAQRISFKKPIDSVTISGHKFLGCPTPCGVLITRLKYIDALSRECGIIASRDATITGSRSGHAPILLWYALKKSGLIGIENEVNNCMMKSRYLLNKLRDAGIGAMLNEFSNIVVFERPQDDQFTRRWNLASNEKIAHVVVLKHVTIEMLDSFVSEFVQKRLIWSKFGQFQPLCIAKEVGSRNCACSLHNLSGNYQLNCM 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04314 454 SUPERFAMILY PLP-dependent transferases 68 413 IPR015424 -
Tsu01g04314 454 Gene3D - 86 327 IPR015421 GO:0003824
Tsu01g04314 454 PANTHER SERINE DECARBOXYLASE 15 443 - -
Tsu01g04314 454 Pfam Pyridoxal-dependent decarboxylase conserved domain 107 357 IPR002129 GO:0016830|GO:0019752|GO:0030170
Tsu01g04314 454 Gene3D Aspartate Aminotransferase, domain 1 328 415 IPR015422 GO:0003824
Tsu01g04314 454 PANTHER - 15 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04314 Tsu-Chr1 50969065 50994667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04314 210 351 Calmodulin-binding Proteins AT2G02000 28.571 2.27e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04314 K25193 - gmx:100781665 650.203